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AT5G16620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:15322131 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
chloroplast protein import (Tic40)
Computational
Description (TAIR10)
TIC40; INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), 26S proteasome complex ubiquitin receptor, subunit Rpn13 (InterPro:IPR006773); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16800eggNOG:ENOG410IN5ReggNOG:ENOG410XSN5EMBL:AB008270EMBL:AF428299EMBL:AY093010EMBL:BT006595
EMBL:CP002688EnsemblPlants:AT5G16620EnsemblPlants:AT5G16620.1entrez:831524GeneID:831524Genevisible:Q9FMD5GO:GO:0009507
GO:GO:0009535GO:GO:0009658GO:GO:0009706GO:GO:0009941GO:GO:0016020GO:GO:0016021GO:GO:0031897
GO:GO:0045037Gramene:AT5G16620.1hmmpanther:PTHR22904hmmpanther:PTHR22904:SF373HOGENOM:HOG000082622InParanoid:Q9FMD5IntAct:Q9FMD5
InterPro:IPR006636iPTMnet:Q9FMD5KEGG:ath:AT5G16620OMA:TTESRPMPaxDb:Q9FMD5PDB:2LNMPDBsum:2LNM
Pfam:Q9FMD5PhylomeDB:Q9FMD5PRIDE:Q9FMD5PRO:PR:Q9FMD5ProteinModelPortal:Q9FMD5Proteomes:UP000006548RefSeq:NP_197165.1
SMART:SM00727SMR:Q9FMD5STRING:3702.AT5G16620.1TAIR:AT5G16620tair10-symbols:ATTIC40tair10-symbols:PDE120tair10-symbols:TIC40
TCDB:3.A.9.1.2UniGene:At.25049UniGene:At.57178UniProt:Q9FMD5
Coordinates (TAIR10) chr5:+:5450808..5454256
Molecular Weight (calculated) 48905.80 Da
IEP (calculated) 5.07
GRAVY (calculated) -0.55
Length 447 amino acids
Sequence (TAIR10)
(BLAST)
001: MENLTLVSCS ASSPKLLIGC NFTSSLKNPT GFSRRTPNIV LRCSKISASA QSQSPSSRPE NTGEIVVVKQ RSKAFASIFS SSRDQQTTSV ASPSVPVPPP
101: SSSTIGSPLF WIGVGVGLSA LFSYVTSNLK KYAMQTAMKT MMNQMNTQNS QFNNSGFPSG SPFPFPFPPQ TSPASSPFQS QSQSSGATVD VTATKVETPP
201: STKPKPTPAK DIEVDKPSVV LEASKEKKEE KNYAFEDISP EETTKESPFS NYAEVSETNS PKETRLFEDV LQNGAGPANG ATASEVFQSL GGGKGGPGLS
301: VEALEKMMED PTVQKMVYPY LPEEMRNPET FKWMLKNPQY RQQLQDMLNN MSGSGEWDKR MTDTLKNFDL NSPEVKQQFN QIGLTPEEVI SKIMENPDVA
401: MAFQNPRVQA ALMECSENPM NIMKYQNDKE VMDVFNKISQ LFPGMTG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)