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AT5G16560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Encodes a KANADI protein (KAN) that regulates organ polarity in Arabidopsis. KAN is required for abaxial identity in both leaves and carpels, and encodes a nuclear-localized protein in the GARP family of putative transcription factors. Together with KAN2, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN2 and KAN4, KAN1 appears to be required for proper regulation of PIN1 in early embryogenesis.
Computational
Description (TAIR10)
KANADI (KAN); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G32240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:16794eggNOG:ENOG410IFX1eggNOG:ENOG410YB3TEMBL:AB005242EMBL:AY030192EMBL:AY037864EMBL:AY048688
EMBL:BT026436EMBL:CP002688EnsemblPlants:AT5G16560EnsemblPlants:AT5G16560.1entrez:831518Gene3D:1.10.10.60GeneID:831518
Genevisible:Q93WJ9GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009887GO:GO:0009943
GO:GO:0009944GO:GO:0009956GO:GO:0010051GO:GO:0010158GO:GO:0044212GO:GO:0048440GO:GO:0048481
Gramene:AT5G16560.1hmmpanther:PTHR31496hmmpanther:PTHR31496:SF7HOGENOM:HOG000241649InParanoid:Q93WJ9IntAct:Q93WJ9InterPro:IPR001005
InterPro:IPR006447InterPro:IPR009057KEGG:ath:AT5G16560OMA:MGINGNDPaxDb:Q93WJ9Pfam:PF00249Pfam:Q93WJ9
PhylomeDB:Q93WJ9PRIDE:Q93WJ9PRO:PR:Q93WJ9ProteinModelPortal:Q93WJ9Proteomes:UP000006548RefSeq:NP_568334.1SMR:Q93WJ9
STRING:3702.AT5G16560.1SUPFAM:SSF46689TAIR:AT5G16560tair10-symbols:KANtair10-symbols:KAN1TIGRfam:TIGR01557TIGRFAMs:TIGR01557
UniGene:At.6466UniGene:At.66763UniProt:Q93WJ9
Coordinates (TAIR10) chr5:-:5407365..5411092
Molecular Weight (calculated) 45848.10 Da
IEP (calculated) 8.65
GRAVY (calculated) -1.01
Length 403 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMEGVFLEK TKTNTTTTLP DLSLHISLPD IHQYHHNESS KESSRRSSQL ENNNRSSNFE LSLSHHNHPT ARIFHCPDRR TLNLPHQQHY NNPIINGVHQ
101: RVDESEISNL HRPIRGIPVY HNRSFPFHQQ NSSLPSLGGG DMDQISILNS SSGYNNAYRS LQSSPRLKGV PLHHHHHHNQ YGVVGSSDSS SPHHHNHHHH
201: GMIRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINGNEVH
301: HQSSTDQRAQ SDDTSLHQET DISSTQPRWS NSSRETWPLS NNCSSDIDTM IRTSSTSMIS HYQRSSIQNQ EQRSNDQAKR CGNLSCENPS LEFTLGRPDW
401: HEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)