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AT5G16520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.954
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHAIeggNOG:ENOG410Y9A9EMBL:BT002474EMBL:BT008370
EMBL:CP002688EnsemblPlants:AT5G16520EnsemblPlants:AT5G16520.1entrez:831514
GeneID:831514GO:GO:0016021Gramene:AT5G16520.1hmmpanther:PTHR37254
HOGENOM:HOG000237392KEGG:ath:AT5G16520ncoils:CoilOMA:YLLVQCE
PhylomeDB:Q8GUJ0Proteomes:UP000006548RefSeq:NP_197156.2TAIR:AT5G16520
TMHMM:TMhelixUniGene:At.31665UniProt:Q8GUJ0
Coordinates (TAIR10) chr5:-:5394740..5397371
Molecular Weight (calculated) 68316.70 Da
IEP (calculated) 8.12
GRAVY (calculated) -0.09
Length 608 amino acids
Sequence (TAIR10)
(BLAST)
001: MACPRNSITY NATRCACGIG QLLNRSSGSC EIFGWPSTIS TDKDVNYSVI SFAETLFAFD RIRKFTQSQA IFLEATLVML LSWLVFCFFL RFTKLGDGRN
101: VWFNLRWWIT RLDVFFSTRH WLDDQQIVKK RKTELGGTFS VASWIVFIGL FAALLYQIIT KRTIEVHNVR ATGSPDLISF ENDLEFNITA VSDMSCSNLR
201: GIGNVVMGNP GFSEFKVAAL SSLGSYTCKN TTSGPTVNFK CTKCRLTNDY IYISWHFVDL PDSPAAAVGF QFNFTSKNGP NEKHMSFVSG TLRNGSILDE
301: SPVTFRGTEG NILKFNLFPR IYHHLHDLKL IQPLFHEFIP GSVYRDTTQL QASMGRSTDG ILNTTLFINY LSAYIVEIDH ENILGPVSFL ADLGGLYCIS
401: IGIFFYLLVQ CEYRIKKLRN EDTVFRKIRN RRKALDHWDK LRRYVAYTWD CSILVDDAIK TTKVSGMCGL TRPPTSSNSS EHGESIMANK KPNLGIEKNV
501: ISQPASLELS SFDSASSLAH GDNFSNKKSI THPISHSEDV SIPPPPPMEF IDGSSGSEVD AMDIKNKFQL LYDYNVLLRE KLLETQSLLN TLAPKPIASS
601: SSTVERSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)