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AT5G16470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.880
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger (C2H2 type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (C2H2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT3G02790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYP0eggNOG:ENOG41121RPEMBL:AB005242EMBL:AK228163EMBL:BT003166EMBL:CP002688EnsemblPlants:AT5G16470
EnsemblPlants:AT5G16470.1entrez:831508GeneID:831508GO:GO:0003700GO:GO:0006355GO:GO:0071452Gramene:AT5G16470.1
hmmpanther:PTHR21213hmmpanther:PTHR21213:SF6HOGENOM:HOG000242063InterPro:IPR026939KEGG:ath:AT5G16470OMA:LINLHADPANTHER:PTHR21213
PhylomeDB:Q9FFD8Proteomes:UP000006548RefSeq:NP_197151.1STRING:3702.AT5G16470.1SUPFAM:0050724SUPFAM:SSF118359TAIR:AT5G16470
UniGene:At.23125UniProt:Q9FFD8
Coordinates (TAIR10) chr5:+:5379516..5379830
Molecular Weight (calculated) 11239.60 Da
IEP (calculated) 10.55
GRAVY (calculated) -1.06
Length 104 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGKAKPKKH TAKELQAKAD AALTNRGGGK AGLADRTGKE KGGHAKYECP HCKITVPDLK TMQIHHESKH PKLTYEEPRN LHEALAAPAE SSKPKPGIRG
101: SLKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)