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AT5G16450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; FUNCTIONS IN: ribonuclease inhibitor activity; INVOLVED IN: regulation of RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (InterPro:IPR005493), Ribonuclease E inhibitor RraA (InterPro:IPR010203); BEST Arabidopsis thaliana protein match is: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (TAIR:AT3G02770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:831506EC:4.1.1.3EC:4.1.3.17eggNOG:COG0684
eggNOG:ENOG410IGW2EMBL:AK317359EnsemblPlants:AT5G16450EnsemblPlants:AT5G16450.1
EnsemblPlants:AT5G16450.2entrez:831506ExpressionAtlas:B9DH14Gene3D:3.50.30.40
GeneID:831506GO:GO:0008428GO:GO:0008948GO:GO:0046872
GO:GO:0047443GO:GO:0051252Gramene:AT5G16450.1Gramene:AT5G16450.2
hmmpanther:PTHR33254hmmpanther:PTHR33254:SF4InterPro:IPR005493InterPro:IPR010203
KEGG:ath:AT5G16450OMA:WIMADDDPaxDb:B9DH14Pfam:PF03737
Pfam:Q9FFE0PhylomeDB:B9DH14PRIDE:B9DH14ProteinModelPortal:B9DH14
RefSeq:NP_197149.1RefSeq:NP_850830.1SMR:B9DH14STRING:3702.AT5G16450.1
SUPFAM:SSF89562TAIR:AT5G16450TIGRfam:TIGR01935TIGRFAMs:TIGR01935
UniGene:At.20374UniProt:B9DH14UniProt:Q9FFE0
Coordinates (TAIR10) chr5:+:5374357..5375342
Molecular Weight (calculated) 17821.50 Da
IEP (calculated) 5.23
GRAVY (calculated) 0.05
Length 166 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFVTTAEVC DANQELIRSG QLRALQPIFQ IYGRRQIFSG PVVTVKVFED NGLIRQFIEE KGNGRVLVVD GGGSQRCAIL GGNPVVQAQN NGWAGIVVNG
101: CIRDVDEING CDIGVRALAS HPIKASKKGL GEQRVPVNIA GTRICDGEWL YADTDGILVS QIELSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)