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AT5G16400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : thioredoxin F2
Curator
Summary (TAIR10)
Encodes an f-type thioredoxin (Trx-f2) localized in chloroplast stroma.
Computational
Description (TAIR10)
thioredoxin F2 (TRXF2); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: positive regulation of catalytic activity; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin F-type 1 (TAIR:AT3G02730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16777eggNOG:COG0526eggNOG:KOG0907EMBL:AB005242EMBL:AF144386EMBL:AF370356EMBL:AY059086
EMBL:CP002688EnsemblPlants:AT5G16400EnsemblPlants:AT5G16400.1entrez:831501Gene3D:3.40.30.10GeneID:831501Genevisible:Q9XFH9
GO:GO:0000103GO:GO:0005829GO:GO:0006457GO:GO:0006662GO:GO:0008047GO:GO:0009507GO:GO:0009570
GO:GO:0015035GO:GO:0016671GO:GO:0034599GO:GO:0043085GO:GO:0045454GO:GO:0055114Gramene:AT5G16400.1
hmmpanther:PTHR10438hmmpanther:PTHR10438:SF258HOGENOM:HOG000238599InParanoid:Q9XFH9InterPro:IPR005746InterPro:IPR012336InterPro:IPR013766
InterPro:IPR017937KEGG:ath:AT5G16400OMA:SEKYQDMPANTHER:PTHR10438PaxDb:Q9XFH9Pfam:PF00085Pfam:Q9XFH9
Pfscan:PS51352PhylomeDB:Q9XFH9PRIDE:Q9XFH9PRO:PR:Q9XFH9PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:Q9XFH9
Proteomes:UP000006548RefSeq:NP_197144.1scanprosite:PS00194SMR:Q9XFH9STRING:3702.AT5G16400.1SUPFAM:SSF52833TAIR:AT5G16400
tair10-symbols:ATF2tair10-symbols:TRXF2UniGene:At.6451UniProt:Q9XFH9
Coordinates (TAIR10) chr5:-:5363905..5365249
Molecular Weight (calculated) 20000.40 Da
IEP (calculated) 9.07
GRAVY (calculated) -0.06
Length 185 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLSLRLAPS PTSFRYSPIT STGAGGFSPV KQHCRIPNSG VATKIGFCSG GGGVLDSGRR IGSCVVRCSL ETVNVTVGQV TEVDKDTFWP IVKAAGDKIV
101: VLDMYTQWCG PCKVIAPKYK ELSEKYQDMV FLKLDCNQDN KPLAKELGIR VVPTFKILKD NKVVKEVTGA KYEDLLAAIE AARSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)