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AT5G16380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF538
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT3G07470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSE7eggNOG:ENOG41108W3EMBL:AY063989EMBL:AY117177
EMBL:CP002688EnsemblPlants:AT5G16380EnsemblPlants:AT5G16380.1entrez:831499
Gene3D:2.30.240.10GeneID:831499Gramene:AT5G16380.1hmmpanther:PTHR31676
hmmpanther:PTHR31676:SF8InterPro:IPR007493KEGG:ath:AT5G16380OMA:DAKFENQ
Pfam:PF04398PhylomeDB:Q8VZN3Proteomes:UP000006548RefSeq:NP_568330.1
SMR:Q8VZN3SUPFAM:0051283SUPFAM:SSF141562TAIR:AT5G16380
TMHMM:TMhelixUniGene:At.27116UniProt:Q8VZN3
Coordinates (TAIR10) chr5:-:5359730..5360613
Molecular Weight (calculated) 21824.00 Da
IEP (calculated) 5.00
GRAVY (calculated) -0.16
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSQDLFFL IIVLFSSILF PQLSSLPDPS FYDYLRESNL PAGIVPKGVT NFSIDIKTGR FTVALPVPCD AKFENQFHFD YNISGVLSDG RIGNLSGVTQ
101: KELFLWFAVK GIHVDPQSSG LIHFDVGVAD KQLSLSLFES PRDCTAAESQ PRAVDLSRPR DLEKQSEEMQ STMQKQPEEI QSIFGPRRSR WTLGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)