suba logo
AT5G16320.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.951
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : FRIGIDA like 1
Curator
Summary (TAIR10)
family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004884
Computational
Description (TAIR10)
FRIGIDA like 1 (FRL1); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA like 2 (TAIR:AT1G31814.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16769eggNOG:ENOG410IYFFeggNOG:ENOG410YI1UEMBL:AB005242EMBL:AY075663EMBL:AY101525EMBL:BK004884
EMBL:CP002688EnsemblPlants:AT5G16320EnsemblPlants:AT5G16320.1entrez:831493GeneID:831493Genevisible:Q9FFF1GO:GO:0009908
GO:GO:0030154Gramene:AT5G16320.1hmmpanther:PTHR31791hmmpanther:PTHR31791:SF10HOGENOM:HOG000090456InParanoid:Q9FFF1IntAct:Q9FFF1
InterPro:IPR012474KEGG:ath:AT5G16320ncoils:CoilOMA:WADLDSHPaxDb:Q9FFF1Pfam:PF07899Pfam:Q9FFF1
PhylomeDB:Q9FFF1PRIDE:Q9FFF1PRO:PR:Q9FFF1Proteomes:UP000006548RefSeq:NP_197136.1STRING:3702.AT5G16320.1TAIR:AT5G16320
tair10-symbols:FRL1UniGene:At.31690UniProt:Q9FFF1
Coordinates (TAIR10) chr5:+:5344507..5345919
Molecular Weight (calculated) 52834.00 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.42
Length 470 amino acids
Sequence (TAIR10)
(BLAST)
001: MTASETIATA INQIDEKKEK LKKAFDDLQA HRSLLSPSFS LSWSEIDSHF SSLQSSLASR FRLLHSTSPL EHDSYRIDAS DAGKSSSSEE VSEQPVVEPE
101: LRALCEKIDG IGLIKYLIRI WDDETPLNQE VSAAIRYSPD TASMVLDAIE GSNYTPSSSG RSFDVRRVFV LLMEVLIEIN ANITVDTRNR AKKLAYHWKS
201: KVGVKPFEAL VFLHLVAAFE LGSEFDTEEL SDYVFMIAKY KQATLVCNKI GVDRKRVGKL IKTLLDSGKP ILAVKFMYEC GMTDEFEPIP VLKSYIKDCR
301: EAALRVCVED NYSLKSQNEA SDKEVSALKP LIKIIKDQNL ESEFTQEKVE ERVEELEKNK ALRKRNTTNP PKQEPQQKGK KRTRDCKNGS QVPVPSQQLL
401: SRPEALLMPE HSHHGLQLNP YGLMTSAFSG VVVNPLTGLF GSGATPQSLY YAQQTGYVLP PQYHPPYYSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)