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AT5G16280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPCJeggNOG:KOG1938EMBL:CP002688EnsemblPlants:AT5G16280EnsemblPlants:AT5G16280.1entrez:831488ExpressionAtlas:F4KCR0
Gene3D:1.25.40.10GeneID:831488Gramene:AT5G16280.1hmmpanther:PTHR12975hmmpanther:PTHR12975:SF6InParanoid:F4KCR0InterPro:IPR011990
InterPro:IPR024420iPTMnet:F4KCR0ncoils:CoilOMA:CINSSQDPANTHER:PTHR12975PaxDb:F4KCR0Pfam:PF12739
PRIDE:F4KCR0ProteinModelPortal:F4KCR0Proteomes:UP000006548RefSeq:NP_197132.2STRING:3702.AT5G16280.1SUPFAM:SSF48452TAIR:AT5G16280
UniGene:At.31694UniProt:F4KCR0
Coordinates (TAIR10) chr5:-:5323377..5331345
Molecular Weight (calculated) 143588.00 Da
IEP (calculated) 6.63
GRAVY (calculated) -0.34
Length 1272 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVEPVNSSLG KMLLEEISPV VMVLCTPLVE DTFLRNGLSF VETLKPFCNF SNIDVPVRTS SDQLYRLKKF TLRLFYASDI KQPNVEVAKQ RLERVITQAG
0101: EKDFQDLKSD PPQITDILSN PESEIAPSWF RYYNKELIRT LSFSDHEAFD HPVACLLVVS SKDEEPIKKF VDLFNSNRLP TDGTMDPNIL KHYLLVHDNQ
0201: DATTERTSKV LSEMRSQFGN NECNLLCTNS SKEGNVEHQA NPWASFKSSV SADKLGCALT GDDIVEIKDL MQEFASRHII PYMEQKVREL NQQISATRKG
0301: LKNQFKNFLW RKGKDDNPDA TKGSMYTYSS TESQIRILGD YAFMLHDYEL ALSSYRLIYT DYNIDKAWKH YAGVQEMRGL AYFISDQPKK DSECMENAFS
0401: TYMKLGKSGF QNATRCGLWW AEMLKARDQH KEAASVYFRI CGEEPLHAAV MLEQASYCFM LTKPAMLHKY GFHLVLSGDH YKNCNQVNHA IRTYKSAISV
0501: YKSTTWSHIK DHLYFHIGQW YAIVGMHDVA VRNMLKVLDC GYQSKATQEI FLRDFFDIVK KTGMKHEVVG LQLPILNMSS LQVIYEDHRT YASQASALVE
0601: ESIWQSLEDD IIPSLNSGKS NWLELQSKLL PKKYKESNVC VAGESVKLDL EFRNPLLIST SITSVSLICE LTANSDDLKL VDNEPSGSSL SPEISTEHNQ
0701: VTTSGFSSFT LSEVDFTLGG GEKKLVRLTV TPSEEGILKI VGVRWELSGS IVGVHYFQSV SVKAKTARGR RKNKLTPTDA LKFLVIKSLP RLEGSIDHLP
0801: EKLYAGDLRY LVLELRNKSE SPTKNLKMKI SHPRFVSPGN HEEELTTEFP DCLKKGDEHN IVQRESNRTS SVFAFPKDVS LQGDRSLRWP LWLRAAIPGT
0901: ISLYFTIYYE MENVSSMKYR TLRMHYNLQV LPSLQTSFKV TPSPSRLQEF LVRMDIVNRA KSDCFQIHQL STVGCRWGIS LLQPVDTILP SKFLLAGQAL
1001: SCFFMIKDCR KSGTEDEETT SLPPSQTDVK LYTQDDDEKL FDIVSSPLAS FHESERSCQG PSVQVSPNTV DFILISRLAK SSSPSAVPDL PKILSHHSCH
1101: NSIRSSSPIS WSLDGPQTIH HDFSTSLCEI KLKMVIRNTS DGISSVTINT NDFLPDAAAT TSSSGNQSGW RYVPTITEEM KLTSDVMGSR LGKPPSSMES
1201: SPPFIWSGLS STKIQIQPLS TTEIPLQISV FSPGIYDLSS YELNWELSEH ESATSSGTCQ GYPYYLTVLQ SE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)