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AT5G16210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:20843791 (2010): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HEAT repeat-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HEAT repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), LisH dimerisation motif (InterPro:IPR006594), Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IUDIeggNOG:ENOG410Y5MUEMBL:AY069870EMBL:CP002688EnsemblPlants:AT5G16210EnsemblPlants:AT5G16210.1entrez:831480
Gene3D:1.25.10.10GeneID:831480Gramene:AT5G16210.1hmmpanther:PTHR32059hmmpanther:PTHR32059:SF0InterPro:IPR006594InterPro:IPR011989
InterPro:IPR016024InterPro:IPR021133KEGG:ath:AT5G16210ncoils:CoilOMA:INHLVNEPfscan:PS50077Pfscan:PS50896
PhylomeDB:Q8VYW7PROSITE:PS50077PROSITE:PS50896Proteomes:UP000006548RefSeq:NP_197125.2SMART:SM00667STRING:3702.AT5G16210.1
SUPFAM:SSF48371TAIR:AT5G16210UniGene:At.9996UniProt:Q8VYW7
Coordinates (TAIR10) chr5:-:5290999..5297779
Molecular Weight (calculated) 132316.00 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.32
Length 1180 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDAERSSLCN FFVNFLMEEN YLLTAFELLH ELLDDGRDAQ AIRLKEFFSD PSRFPPDQIS RYNSIRVADP QSLLEEKEAL AEKLAISEYE FRLAQEDIAR
0101: LKTEGQKKSV PSIDKSEEMD SDEFGGNRPE IQRKKKDFSF TDIGPLKNNE RQDLNCAVKE YLLLAGYRLT AMTFYEEVTD QNLDVWQDSP AHVPDALRYY
0201: YYQYLSSTSE AAEEKIAMLQ ENESLKKEIE RLSKEKDGLL KSKENFEEQI GAFNKSTESL QKDLRDREKQ VQSLKQSSEH QRRNLNDCRA EITSLKMHIE
0301: GSRAGQYVSL NEGDPVKLQS KEVEEQISTL SEEVVNPTVE KDGGLISKVS ISAEKGHIQT EDDMVVEEVK NIIADQREVA GEAGNISYAN NGTLENQKEV
0401: SNYLLSPSNG NFSPRDLGSI LKVDPGIGRD SNSKSDNANG EAASEEMGLG TIQILADALP NIVPYVLINH REELLPLMMC AIERHPVSST RDSLTHTLFN
0501: LIKRPDEQQR RIIMDACVSL SRNVGEMRTE TELLPQCWEQ INHTYEERRL LVAQSCGELA EYVRPEIRDS LILSIVQQLI EDSATVVREA AAHNLALLLP
0601: LFPNTDKYFK VEEMMFQLIC DPSGLVVETT LKELLPAVIK WGNRLDHILR GLLSHTLSSA QHCPPLSGVE GSLESHLRVL GERERWNIDV LLRMLMELLP
0701: AIHQKAMTTC PFSSISKSEE SAFSVSLLEI YAEGRSEWPM FEWMHVDCFA NLLQLACMLP QKEDHLRNRI TKFLLAVSER FGSSYLTHIE LPVFLVAAGD
0801: DEADLRFLPS AIHPRIKGLK PRTAVANRLA TLCILPLLLA GVLGAPSKRE ELTIFLRQLL VESKTKENQS SKHNNEVLDA VRFLCTFEVH HNMIFGILWE
0901: MVVDSTAELK INAAKLLKTI VPYIDAKVAS ANVLPALITL GSDQNLNVKY ASIDAFGSVA QHFKVDMIVD KILVQMDAFM EDGSHEAIIA VIRALLVAIP
1001: HTTERLRDYL LSKILQLSAS PSSSTDVNRR RERANAFCEA IRALDATDLS QTSVKEYLLP AIQNLLKDPD ALDPAHKEAL EIIMKERSGG TFEAISKAMG
1101: AHLGIASSVT SLFGEGGLLG KKEATESTAP GSPTGQGPES PKVVAAASED TRFRRIMRGN FTEMLRSKAK TQDETQPQNH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)