AT5G16210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HEAT repeat-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HEAT repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), LisH dimerisation motif (InterPro:IPR006594), Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5290999..5297779 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 132316.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.97 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||
| Length | 1180 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDAERSSLCN FFVNFLMEEN YLLTAFELLH ELLDDGRDAQ AIRLKEFFSD PSRFPPDQIS RYNSIRVADP QSLLEEKEAL AEKLAISEYE FRLAQEDIAR 0101: LKTEGQKKSV PSIDKSEEMD SDEFGGNRPE IQRKKKDFSF TDIGPLKNNE RQDLNCAVKE YLLLAGYRLT AMTFYEEVTD QNLDVWQDSP AHVPDALRYY 0201: YYQYLSSTSE AAEEKIAMLQ ENESLKKEIE RLSKEKDGLL KSKENFEEQI GAFNKSTESL QKDLRDREKQ VQSLKQSSEH QRRNLNDCRA EITSLKMHIE 0301: GSRAGQYVSL NEGDPVKLQS KEVEEQISTL SEEVVNPTVE KDGGLISKVS ISAEKGHIQT EDDMVVEEVK NIIADQREVA GEAGNISYAN NGTLENQKEV 0401: SNYLLSPSNG NFSPRDLGSI LKVDPGIGRD SNSKSDNANG EAASEEMGLG TIQILADALP NIVPYVLINH REELLPLMMC AIERHPVSST RDSLTHTLFN 0501: LIKRPDEQQR RIIMDACVSL SRNVGEMRTE TELLPQCWEQ INHTYEERRL LVAQSCGELA EYVRPEIRDS LILSIVQQLI EDSATVVREA AAHNLALLLP 0601: LFPNTDKYFK VEEMMFQLIC DPSGLVVETT LKELLPAVIK WGNRLDHILR GLLSHTLSSA QHCPPLSGVE GSLESHLRVL GERERWNIDV LLRMLMELLP 0701: AIHQKAMTTC PFSSISKSEE SAFSVSLLEI YAEGRSEWPM FEWMHVDCFA NLLQLACMLP QKEDHLRNRI TKFLLAVSER FGSSYLTHIE LPVFLVAAGD 0801: DEADLRFLPS AIHPRIKGLK PRTAVANRLA TLCILPLLLA GVLGAPSKRE ELTIFLRQLL VESKTKENQS SKHNNEVLDA VRFLCTFEVH HNMIFGILWE 0901: MVVDSTAELK INAAKLLKTI VPYIDAKVAS ANVLPALITL GSDQNLNVKY ASIDAFGSVA QHFKVDMIVD KILVQMDAFM EDGSHEAIIA VIRALLVAIP 1001: HTTERLRDYL LSKILQLSAS PSSSTDVNRR RERANAFCEA IRALDATDLS QTSVKEYLLP AIQNLLKDPD ALDPAHKEAL EIIMKERSGG TFEAISKAMG 1101: AHLGIASSVT SLFGEGGLLG KKEATESTAP GSPTGQGPES PKVVAAASED TRFRRIMRGN FTEMLRSKAK TQDETQPQNH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)