suba logo
AT5G16140.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptidyl-tRNA hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G38290.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G16140-MONOMERBioCyc:ARA:GQT-1501-MONOMEReggNOG:COG0193eggNOG:KOG2255
EMBL:AK175292EMBL:AL391148EMBL:BT010650EMBL:CP002688
EnsemblPlants:AT5G16140EnsemblPlants:AT5G16140.1EnsemblPlants:AT5G16140.2entrez:831471
Gene3D:3.40.50.1470GeneID:831471Genevisible:Q9LF14GO:GO:0004045
GO:GO:0006397GO:GO:0008380GO:GO:0009570GO:GO:0030529
Gramene:AT5G16140.1Gramene:AT5G16140.2HAMAP:MF_00083hmmpanther:PTHR17224
hmmpanther:PTHR17224:SF3HOGENOM:HOG000004797InParanoid:Q9LF14InterPro:IPR001328
InterPro:IPR018171KEGG:ath:AT5G16140KO:K01056OMA:YHNGVKS
PANTHER:PTHR17224PaxDb:Q9LF14Pfam:PF01195Pfam:Q9LF14
PhylomeDB:Q9LF14PIR:T51484PRIDE:Q9LF14PRO:PR:Q9LF14
PROSITE:PS01195PROSITE:PS01196ProteinModelPortal:Q9LF14Proteomes:UP000006548
RefSeq:NP_001078593.1RefSeq:NP_197118.1scanprosite:PS01195scanprosite:PS01196
SMR:Q9LF14STRING:3702.AT5G16140.1SUPFAM:SSF53178TAIR:AT5G16140
TIGRfam:TIGR00447TIGRFAMs:TIGR00447UniGene:At.31709UniProt:Q9LF14
Coordinates (TAIR10) chr5:-:5270308..5271517
Molecular Weight (calculated) 26936.90 Da
IEP (calculated) 10.16
GRAVY (calculated) -0.31
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MLCPTYTPSV YHFQTQKPVF RKQRFRVCSS TSGGEDDRFK VEYTPWLIVG LGNPGNKYHG TRHNVGFEMI DVLARKEGVL MNTIQSKALI GIGAIEDVPI
101: LLAKPQTYMN FSGESVGSLA SHYRVPLRHI LMIYDEMALP NGVLRLQPKG GQGYHNGVKS VMGHLDGRRN FPRLSIGIGK PPGNMDMKAF LLQKFSPLEQ
201: KQIEEALEQG SEAVKTLVLN GFNQGISRFN LVQKYKFHKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)