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AT5G16130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S7e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S7e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: Ribosomal protein S7e family protein (TAIR:AT3G02560.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16746eggNOG:ENOG410ZYKBeggNOG:KOG3320EMBL:AK227242
EMBL:AL391148EMBL:AY086292EMBL:BT024914EMBL:CP002688
EnsemblPlants:AT5G16130EnsemblPlants:AT5G16130.1entrez:831470GeneID:831470
Genevisible:Q8LD03GO:GO:0003735GO:GO:0005730GO:GO:0005829
GO:GO:0005886GO:GO:0006412GO:GO:0009506GO:GO:0016020
GO:GO:0022626GO:GO:0022627Gramene:AT5G16130.1hmmpanther:PTHR11278
hmmpanther:PTHR11278:SF1HOGENOM:HOG000197237InParanoid:Q8LD03InterPro:IPR000554
iPTMnet:Q8LD03KEGG:ath:AT5G16130KO:K02993ncoils:Coil
OMA:DIAFEFPPANTHER:PTHR11278PaxDb:Q8LD03Pfam:PF01251
Pfam:Q8LD03PhylomeDB:Q8LD03PIR:T51483PRIDE:Q8LD03
PRO:PR:Q8LD03PROSITE:PS00948ProteinModelPortal:Q8LD03Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695
Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_197117.1scanprosite:PS00948SMR:Q8LD03STRING:3702.AT5G16130.1
TAIR:AT5G16130UniGene:At.24171UniGene:At.38580UniProt:Q8LD03
Coordinates (TAIR10) chr5:+:5268984..5269912
Molecular Weight (calculated) 22061.90 Da
IEP (calculated) 10.37
GRAVY (calculated) -0.59
Length 190 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSAQNKIKK DKNAEPTECE EQVAQALFDL ENTNQELKSE LKDLYINQAV HMDISGNRKA VVIYVPFRLR KAFRKIHPRL VRELEKKFSG KDVIFVTTRR
101: IMRPPKKGAA VQRPRNRTLT SVHEAMLEDV AFPAEIVGKR TRYRLDGSKI MKVFLDAKEK NNTEYKLETM VGVYRKLTGK DVVFEYPVEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)