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AT5G16110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.761
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZR0eggNOG:ENOG410YS9FEMBL:AL391148EMBL:CP002688EnsemblPlants:AT5G16110EnsemblPlants:AT5G16110.1entrez:831468
GeneID:831468Gramene:AT5G16110.1hmmpanther:PTHR33384hmmpanther:PTHR33384:SF2HOGENOM:HOG000244166KEGG:ath:AT5G16110OMA:RWHTSHA
PhylomeDB:Q9LF17PIR:T51481Proteomes:UP000006548RefSeq:NP_568326.2STRING:3702.AT5G16110.1TAIR:AT5G16110UniGene:At.24196
UniGene:At.26757UniGene:At.73102UniProt:Q9LF17
Coordinates (TAIR10) chr5:-:5261171..5262668
Molecular Weight (calculated) 26521.70 Da
IEP (calculated) 9.10
GRAVY (calculated) -0.23
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSSTSPTLS SVSSFYKIPI SSNDFSPLSL SLSLSLFLLS SPSSFSLSPL PEIFTQAFFC GSEVKKMNHC NLQQNAFMSR EEMMGFDRKD LVVCPKPRRV
101: GLLANNVIRP LRLHMSQAAA DLCDSKAGAE LLEIIRRKED NGTIGQLLSS SPPYFPGSPP SRAANPLAQD ARFRDEKLNP ISPNSPFLQP YSATGFPSPS
201: SSSSSSSSRG CVRMKFGLNS PAVRVEGFDC LNRDRQNSSI PAMA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)