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AT5G15900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.530
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 19
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 19 (TBL19); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 21 (TAIR:AT5G15890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVKZeggNOG:ENOG410YEYHEMBL:AL391145EMBL:CP002688EnsemblPlants:AT5G15900EnsemblPlants:AT5G15900.1entrez:831447
GeneID:831447Genevisible:Q9LFT0GO:GO:0005794GO:GO:0016021GO:GO:0016413GO:GO:0071554Gramene:AT5G15900.1
hmmpanther:PTHR32285hmmpanther:PTHR32285:SF45HOGENOM:HOG000238130InParanoid:Q9LFT0InterPro:IPR025846InterPro:IPR026057InterPro:IPR029962
KEGG:ath:AT5G15900OMA:ISSGHWHPANTHER:PTHR32285PaxDb:Q9LFT0Pfam:PF13839Pfam:PF14416Pfam:Q9LFT0
PhylomeDB:Q9LFT0PIR:T51373PRIDE:Q9LFT0PRO:PR:Q9LFT0Proteomes:UP000006548RefSeq:NP_197094.1STRING:3702.AT5G15900.1
TAIR:AT5G15900tair10-symbols:TBL19TMHMM:TMhelixUniGene:At.31739UniProt:Q9LFT0
Coordinates (TAIR10) chr5:-:5189524..5192070
Molecular Weight (calculated) 49529.90 Da
IEP (calculated) 6.12
GRAVY (calculated) -0.43
Length 426 amino acids
Sequence (TAIR10)
(BLAST)
001: MELVHSATFP CKQKLLIAVT IATSLLTIIP LLYPLLEDPN FFLKQQPPSQ SSIINLENGV VTSHDSCDIF SGEWVPNPEA PYYTNTTCWA IHEHQNCMKF
101: GRPDTDFIKW KWKPYGCEDG LPVFDPVRFL EIVRGKTMAF VGDSVSRNHM QSLICLLSQV EYPMDASVKN DDYFKRWTYE TYNFTIAAFW TPHLVKSKEP
201: DQTQPKHIDI FDLYLDEADE SWTADIGDFD FVIISSGHWH YRPSVYYENR TITGCHYCQL PNITDLTMFY GYRKAFRTAF KAILDSESFK GVMYLRSFAP
301: SHFEGGLWNE GGDCLRKQPY RSNETQDETT MKLHKIQLEE FWRAEEEAKK KGKRLRLLDT TQAMWLRPDG HPSRYGHIPE ANVTLYNDCV HWCLPGPIDN
401: LNDFLLAMLK REEDKGFLAQ VRKMLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)