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AT5G15890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.951
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 21
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 21 (TBL21); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 19 (TAIR:AT5G15900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVKZeggNOG:ENOG410YEYHEMBL:AL391145EMBL:CP002688
EnsemblPlants:AT5G15890EnsemblPlants:AT5G15890.1entrez:831446GeneID:831446
Genevisible:Q9LFT1GO:GO:0005794GO:GO:0016021GO:GO:0016413
GO:GO:0071554Gramene:AT5G15890.1hmmpanther:PTHR32285hmmpanther:PTHR32285:SF45
HOGENOM:HOG000238130InParanoid:Q9LFT1InterPro:IPR025846InterPro:IPR026057
InterPro:IPR029962KEGG:ath:AT5G15890OMA:PNENVANPANTHER:PTHR32285
PaxDb:Q9LFT1Pfam:PF13839Pfam:PF14416Pfam:Q9LFT1
PhylomeDB:Q9LFT1PIR:T51372PRIDE:Q9LFT1PRO:PR:Q9LFT1
ProteinModelPortal:Q9LFT1Proteomes:UP000006548RefSeq:NP_197093.1STRING:3702.AT5G15890.1
TAIR:AT5G15890tair10-symbols:TBL21TMHMM:TMhelixUniGene:At.43291
UniGene:At.66717UniProt:Q9LFT1
Coordinates (TAIR10) chr5:-:5187687..5189348
Molecular Weight (calculated) 59869.00 Da
IEP (calculated) 7.03
GRAVY (calculated) -0.53
Length 526 amino acids
Sequence (TAIR10)
(BLAST)
001: MELPLFAILQ RTPRVAITLA FVLFVLTIVP ALYTLLADPI LPPSISSFET DHTRLSHLNS SSNQIPSPVN GSIPTPPYHT PSKHRKSSFH RIPKPKKGPI
101: SSPTDHIPLR QRSSSFDQIP SPMNSPVPAP PHRNSSADQS PSPVNGPIPA PLNHTSLRHL NSSSDDHSSP VTTSPSRTRI RDDEQMCDLF TGEWVPNEEA
201: PYYTNTTCWA IHEHQNCMKY GRPDTGFMRW RWKPESCDLP IFDPQEFLEM VRGKAMGFVG DSISRNQVQS LLCLLSRVEY PEDISPSPDT DFKVWNYTSY
301: NFTLHVMWSP FLVKATKPDP KSNFFSLYLD EYDTKWTSQL DQLDYLVISS GHWFSRPVIF YENQQISGCQ YCALPNTTEL PLTYGYRKAL RISLKAIIEN
401: FKGLAFLRSF SPQHFEGGAW NEGGDCVRTQ PYRRNETIPE ADLKVHDIQR EEFRAAEEDG MKKSGLRLKL MDTTQAMLLR PDGHPGRYGH LQNPNVTLRN
501: DCIHWCLPGP IDTLNDILLQ MMKTDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)