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AT5G15870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyl hydrolase family 81 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycosyl hydrolase family 81 protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity; INVOLVED IN: response to cyclopentenone; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 81 (InterPro:IPR005200); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 81 protein (TAIR:AT1G18310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G15870-MONOMERCAZy:GH81eggNOG:COG5498eggNOG:KOG2254
EMBL:AL391145EMBL:CP002688EnsemblPlants:AT5G15870EnsemblPlants:AT5G15870.1
entrez:831444GeneID:831444GO:GO:0052861Gramene:AT5G15870.1
hmmpanther:PTHR31983HOGENOM:HOG000243109InterPro:IPR005200KEGG:ath:AT5G15870
KO:K01180OMA:SSFIYQVPfam:PF03639PhylomeDB:Q9LFT3
PIR:T51370Proteomes:UP000006548RefSeq:NP_197091.1STRING:3702.AT5G15870.1
TAIR:AT5G15870UniGene:At.65517UniProt:Q9LFT3
Coordinates (TAIR10) chr5:-:5182641..5184878
Molecular Weight (calculated) 82877.00 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.24
Length 745 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKKVRRKVK VLITKPFKKP KNRPPSPPPP LPLPPSPSPP PSQQMSSSRQ KNTPFLFPRS DSSVLPDPSR FFSHDLLSSP LPTNSFFQNF TLNNGDQAEY
101: FHPYIIKPST SSLSISYPSL SHNSAFIYEA FNADITITGS DGPDPHSRKS HLISSFSDLG VTLDFPSSNL RFFLVRGSPF ITFSVNSSIT ISTIHAVLSL
201: SGNTSSTKYT VKLNNNQTWL IYASSPINLT KDGVSSINCG DGFSGIIRIV VLPNPNPYFE TILDGFSCSY PVSGDADFTK PFALEYKWEK RGYGDLLMLA
301: HPLHLKLLST NDCSITVLDN FKYNSIDGDL VGVIGDSWVL KPDPVSVTWH SIKGVQEDSH QEIISALIKD VNALDSSAEV TNSSYFYAKL IARAARLALI
401: AEEVCYLDVI PKIRTYLKNM IEPWLNGSFG PNGFLYDPKW GGVITKLGSR DSGADFGFGI YNDHHYHLGY FVYAIAVLAK IDPLWGKRYR PQAYTLMADY
501: LTLGKKGAKS NSNYPRLRCF DLFKLHSWAG GLTEFADGRN QESTSEAVNA YYSAALLGLA YGDTHLVAAA SMVLTLEIHA AKMWWQVKED DAIYPQDFTS
601: ENRVVGVLWS TKRDSGLWFA PKEWKECRLG IQLLPLLPVS EVLFSDVTFV KQLVNWTMPA LARDSVGEGW KGFVYALESM YDKDGAMEKI KGLNGFDDGN
701: SLSNLLWWVH SRNNDDDDDY EEDDEGGYGG HGGGGKYCSF GHYCH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)