AT5G15870.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 0.999 What is SUBAcon? |
|
||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : glycosyl hydrolase family 81 protein | ||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
Computational Description (TAIR10) |
glycosyl hydrolase family 81 protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity; INVOLVED IN: response to cyclopentenone; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 81 (InterPro:IPR005200); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 81 protein (TAIR:AT1G18310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr5:-:5182641..5184878 | ||||||||||||||||||||||||||||
Molecular Weight (calculated) | 82877.00 Da | ||||||||||||||||||||||||||||
IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||
GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||
Length | 745 amino acids | ||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MLKKVRRKVK VLITKPFKKP KNRPPSPPPP LPLPPSPSPP PSQQMSSSRQ KNTPFLFPRS DSSVLPDPSR FFSHDLLSSP LPTNSFFQNF TLNNGDQAEY 101: FHPYIIKPST SSLSISYPSL SHNSAFIYEA FNADITITGS DGPDPHSRKS HLISSFSDLG VTLDFPSSNL RFFLVRGSPF ITFSVNSSIT ISTIHAVLSL 201: SGNTSSTKYT VKLNNNQTWL IYASSPINLT KDGVSSINCG DGFSGIIRIV VLPNPNPYFE TILDGFSCSY PVSGDADFTK PFALEYKWEK RGYGDLLMLA 301: HPLHLKLLST NDCSITVLDN FKYNSIDGDL VGVIGDSWVL KPDPVSVTWH SIKGVQEDSH QEIISALIKD VNALDSSAEV TNSSYFYAKL IARAARLALI 401: AEEVCYLDVI PKIRTYLKNM IEPWLNGSFG PNGFLYDPKW GGVITKLGSR DSGADFGFGI YNDHHYHLGY FVYAIAVLAK IDPLWGKRYR PQAYTLMADY 501: LTLGKKGAKS NSNYPRLRCF DLFKLHSWAG GLTEFADGRN QESTSEAVNA YYSAALLGLA YGDTHLVAAA SMVLTLEIHA AKMWWQVKED DAIYPQDFTS 601: ENRVVGVLWS TKRDSGLWFA PKEWKECRLG IQLLPLLPVS EVLFSDVTFV KQLVNWTMPA LARDSVGEGW KGFVYALESM YDKDGAMEKI KGLNGFDDGN 701: SLSNLLWWVH SRNNDDDDDY EEDDEGGYGG HGGGGKYCSF GHYCH |
||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)