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AT5G15850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CONSTANS-like 1
Curator
Summary (TAIR10)
Homologous to the flowering-time gene CONSTANS.
Computational
Description (TAIR10)
CONSTANS-like 1 (COL1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: circadian rhythm, regulation of flower development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT5G15840.1); Has 3200 Blast hits to 2506 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 3006; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).
Protein Annotations
BioGrid:16718eggNOG:COG5641eggNOG:KOG1601EMBL:AL391144EMBL:AY074369EMBL:BT002363EMBL:CP002688
EMBL:Y10555EMBL:Y10556EnsemblPlants:AT5G15850EnsemblPlants:AT5G15850.1entrez:831442GeneID:831442Genevisible:O50055
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0008270GO:GO:0009416GO:GO:0009909
GO:GO:0042802Gramene:AT5G15850.1hmmpanther:PTHR31319hmmpanther:PTHR31319:SF10HOGENOM:HOG000238833InParanoid:O50055IntAct:O50055
InterPro:IPR000315InterPro:IPR010402KEGG:ath:AT5G15850MINT:MINT-8070722OMA:CDSEIHSPaxDb:O50055Pfam:O50055
Pfam:PF00643Pfam:PF06203Pfscan:PS50119Pfscan:PS51017PhylomeDB:O50055PIR:T51414PRIDE:O50055
PRO:PR:O50055PROSITE:PS50119PROSITE:PS51017ProteinModelPortal:O50055Proteomes:UP000006548RefSeq:NP_197089.1SMART:SM00336
STRING:3702.AT5G15850.1TAIR:AT5G15850tair10-symbols:ATCOL1tair10-symbols:COL1UniGene:At.24486UniGene:At.48027UniProt:O50055
Coordinates (TAIR10) chr5:-:5176297..5177473
Molecular Weight (calculated) 39492.90 Da
IEP (calculated) 6.50
GRAVY (calculated) -0.66
Length 355 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKVESNWAQ ACDTCRSAAC TVYCRADSAY LCSSCDAQVH AANRLASRHE RVRVCQSCER APAAFFCKAD AASLCTTCDS EIHSANPLAR RHQRVPILPI
101: SEYSYSSTAT NHSCETTVTD PENRLVLGQE EEDEDEAEAA SWLLPNSGKN SGNNNGFSIG DEFLNLVDYS SSDKQFTDQS NQYQLDCNVP QRSYGEDGVV
201: PLQIEVSKGM YQEQQNFQLS INCGSWGALR SSNGSLSHMV NVSSMDLGVV PESTTSDATV SNPRSPKAVT DQPPYPPAQM LSPRDREARV LRYREKKKMR
301: KFEKTIRYAS RKAYAEKRPR IKGRFAKKKD VDEEANQAFS TMITFDTGYG IVPSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)