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AT5G15840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : B-box type zinc finger protein with CCT domain
Curator
Summary (TAIR10)
Encodes a protein showing similarities to zinc finger transcription factors, involved in regulation of flowering under long days. Acts upstream of FT and SOC1.
Computational
Description (TAIR10)
CONSTANS (CO); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 2 (TAIR:AT3G02380.1); Has 3403 Blast hits to 2554 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 2; Plants - 3122; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
Protein Annotations
BioGrid:16717eggNOG:COG5641eggNOG:KOG1601EMBL:AL391144
EMBL:AY086574EMBL:BT001926EMBL:CP002688EMBL:X94937
EnsemblPlants:AT5G15840EnsemblPlants:AT5G15840.1entrez:831441GeneID:831441
Genevisible:Q39057GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0008270GO:GO:0009908GO:GO:0009909
GO:GO:0010018GO:GO:0010218GO:GO:0030154hmmpanther:PTHR31319
hmmpanther:PTHR31319:SF10HOGENOM:HOG000238833InParanoid:Q39057IntAct:Q39057
InterPro:IPR000315InterPro:IPR010402KEGG:ath:AT5G15840KO:K12135
MINT:MINT-6608985OMA:RVCESCEPaxDb:Q39057Pfam:PF00643
Pfam:PF06203Pfam:Q39057Pfscan:PS50119Pfscan:PS51017
PhylomeDB:Q39057PIR:A56133PRIDE:Q39057PRO:PR:Q39057
PROSITE:PS50119PROSITE:PS51017ProteinModelPortal:Q39057Proteomes:UP000006548
RefSeq:NP_001031887.1RefSeq:NP_197088.1SMART:SM00336STRING:3702.AT5G15840.1
TAIR:AT5G15840tair10-symbols:COtair10-symbols:FGUniGene:At.18
UniProt:Q39057
Coordinates (TAIR10) chr5:-:5171343..5172697
Molecular Weight (calculated) 41988.70 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.84
Length 373 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKQESNDIG SGENNRARPC DTCRSNACTV YCHADSAYLC MSCDAQVHSA NRVASRHKRV RVCESCERAP AAFLCEADDA SLCTACDSEV HSANPLARRH
101: QRVPILPISG NSFSSMTTTH HQSEKTMTDP EKRLVVDQEE GEEGDKDAKE VASWLFPNSD KNNNNQNNGL LFSDEYLNLV DYNSSMDYKF TGEYSQHQQN
201: CSVPQTSYGG DRVVPLKLEE SRGHQCHNQQ NFQFNIKYGS SGTHYNDNGS INHNAYISSM ETGVVPESTA CVTTASHPRT PKGTVEQQPD PASQMITVTQ
301: LSPMDREARV LRYREKRKTR KFEKTIRYAS RKAYAEIRPR VNGRFAKREI EAEEQGFNTM LMYNTGYGIV PSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)