suba logo
AT5G15800.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : K-box region and MADS-box transcription factor family protein
Curator
Summary (TAIR10)
Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.
Computational
Description (TAIR10)
SEPALLATA1 (SEP1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, ovule development; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT3G02310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:16712DIP:DIP-34935NeggNOG:COG5068eggNOG:KOG0014
EMBL:AK118608EMBL:AL391144EMBL:BT006224EMBL:CP002688
EMBL:M55551EnsemblPlants:AT5G15800EnsemblPlants:AT5G15800.1entrez:831436
ExpressionAtlas:P29382GeneID:831436Genevisible:P29382GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009908
GO:GO:0030154hmmpanther:PTHR11945hmmpanther:PTHR11945:SF196HOGENOM:HOG000155301
InParanoid:P29382IntAct:P29382InterPro:IPR002100InterPro:IPR002487
KEGG:ath:AT5G15800KO:K09264ncoils:CoilPaxDb:P29382
Pfam:P29382Pfam:PF00319Pfam:PF01486Pfscan:PS50066
Pfscan:PS51297PhylomeDB:P29382PIR:B39534PIR:T51409
PRIDE:P29382PRINTS:PR00404PRO:PR:P29382PROSITE:PS00350
PROSITE:PS50066PROSITE:PS51297ProteinModelPortal:P29382Proteomes:UP000006548
RefSeq:NP_001119230.1RefSeq:NP_568322.1scanprosite:PS00350SMART:SM00432
SMR:P29382STRING:3702.AT5G15800.2SUPFAM:SSF55455TAIR:AT5G15800
tair10-symbols:AGL2tair10-symbols:SEP1UniGene:At.10163UniGene:At.49025
UniProt:P29382UniProt:Q5XXN8
Coordinates (TAIR10) chr5:-:5151594..5153767
Molecular Weight (calculated) 28658.30 Da
IEP (calculated) 8.66
GRAVY (calculated) -0.75
Length 251 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SNMLKTLDRY QKCSYGSIEV NNKPAKELEN SYREYLKLKG
101: RYENLQRQQR NLLGEDLGPL NSKELEQLER QLDGSLKQVR SIKTQYMLDQ LSDLQNKEQM LLETNRALAM KLDDMIGVRS HHMGGGGGWE GGEQNVTYAH
201: HQAQSQGLYQ PLECNPTLQM GYDNPVCSEQ ITATTQAQAQ QGNGYIPGWM L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)