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AT5G15790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G02290.1); Has 5281 Blast hits to 5274 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 1803; Fungi - 302; Plants - 2328; Viruses - 9; Other Eukaryotes - 839 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AK229146EMBL:AL391144EMBL:AY140056EMBL:BT006270EMBL:CP002688
EnsemblPlants:AT5G15790EnsemblPlants:AT5G15790.1EnsemblPlants:AT5G15790.2entrez:831435Gene3D:3.30.40.10GeneID:831435GO:GO:0008270
Gramene:AT5G15790.1Gramene:AT5G15790.2hmmpanther:PTHR22763hmmpanther:PTHR22763:SF34HOGENOM:HOG000005881IntAct:Q9LFU7InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT5G15790OMA:DFEDYPNPfam:PF12678Pfam:PF13639Pfscan:PS50089PhylomeDB:Q9LFU7
PIR:T51408PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_197083.1RefSeq:NP_974785.1SMART:SM00184SMR:Q9LFU7
STRING:3702.AT5G15790.1SUPFAM:SSF57850TAIR:AT5G15790UniGene:At.10163UniGene:At.49025UniProt:Q9LFU7
Coordinates (TAIR10) chr5:+:5149800..5150964
Molecular Weight (calculated) 26353.40 Da
IEP (calculated) 5.02
GRAVY (calculated) -0.68
Length 232 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCVSSCFGV DDFEDYPNPS SSVNRSCPCP RCLVNNFLNL YISLFRRGET RSLPSSLQAT NVSIATSTSY DNFMSNTFHS TPRPLPYDAD PRYFRSRRDS
101: LVSRRDKGSS HSHEEAEPLR SDADVDSESF SVEGSKWANK LIISGEDSKE EFSRSSRRIL QSRTMSTSNE GLYITSDDED VCPTCLEEYI SENPKIVTKC
201: SHHFHLSCIY EWMERSENCP VCGKVMEFHE TP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)