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AT5G15640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial substrate carrier family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT1G72820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:831418eggNOG:ENOG410XTGQeggNOG:KOG0765EMBL:AY050878EMBL:AY072317EMBL:AY091213EMBL:AY114556
EMBL:CP002688EnsemblPlants:AT5G15640EnsemblPlants:AT5G15640.1entrez:831418Gene3D:1.50.40.10GeneID:831418GO:GO:0005739
GO:GO:0016021GO:GO:0055085Gramene:AT5G15640.1hmmpanther:PTHR24089hmmpanther:PTHR24089:SF391InterPro:IPR002067InterPro:IPR018108
InterPro:IPR023395KEGG:ath:AT5G15640KO:K15121OMA:LIADDGWPfam:PF00153Pfscan:PS50920PhylomeDB:Q949U9
PRINTS:PR00926PROSITE:PS50920Proteomes:UP000006548RefSeq:NP_568317.1SMR:Q949U9STRING:3702.AT5G15640.1SUPFAM:0048588
SUPFAM:SSF103506TAIR:AT5G15640TMHMM:TMhelixUniGene:At.10150UniProt:Q949U9
Coordinates (TAIR10) chr5:+:5087590..5089677
Molecular Weight (calculated) 34728.10 Da
IEP (calculated) 10.26
GRAVY (calculated) 0.13
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTPPTSRIA SFGQTEINWD KLDKRRFYIN GAGLFTGVTV ALYPVSVVKT RLQVASKEIA ERSAFSVVKG ILKNDGVPGL YRGFGTVITG AVPARIIFLT
101: ALETTKISAF KLVAPLELSE PTQAAIANGI AGMTASLFSQ AVFVPIDVVS QKLMVQGYSG HATYTGGIDV ATKIIKSYGV RGLYRGFGLS VMTYSPSSAA
201: WWASYGSSQR VIWRFLGYGG DSDATAAPSK SKIVMVQAAG GIIAGATASS ITTPLDTIKT RLQVMGHQEN RPSAKQVVKK LLAEDGWKGF YRGLGPRFFS
301: MSAWGTSMIL TYEYLKRLCA IED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)