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AT5G15600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.530
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SPIRAL1-like4
Curator
Summary (TAIR10)
SPIRAL1-LIKE4 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.
Computational
Description (TAIR10)
SPIRAL1-like4 (SP1L4); BEST Arabidopsis thaliana protein match is: SPIRAL1-like3 (TAIR:AT3G02180.2); Has 230 Blast hits to 203 proteins in 47 species: Archae - 0; Bacteria - 6; Metazoa - 11; Fungi - 4; Plants - 139; Viruses - 2; Other Eukaryotes - 68 (source: NCBI BLink).
Protein Annotations
BioGrid:16688eggNOG:ENOG410JSD9eggNOG:ENOG41108WZEMBL:AL391143EMBL:AY087175EMBL:BT004163EMBL:BT005051
EMBL:CP002688EnsemblPlants:AT5G15600EnsemblPlants:AT5G15600.1entrez:831412GeneID:831412Genevisible:Q9LF22GO:GO:0005874
Gramene:AT5G15600.1hmmpanther:PTHR33403hmmpanther:PTHR33403:SF5HOGENOM:HOG000240966InParanoid:Q9LF22IntAct:Q9LF22KEGG:ath:AT5G15600
KO:K18635OMA:RSDGQNCPaxDb:Q9LF22Pfam:Q9LF22PhylomeDB:Q9LF22PIR:T51538PRIDE:Q9LF22
PRO:PR:Q9LF22ProteinModelPortal:Q9LF22Proteomes:UP000006548RefSeq:NP_197064.1STRING:3702.AT5G15600.1TAIR:AT5G15600tair10-symbols:SP1L4
UniGene:At.31778UniProt:Q9LF22
Coordinates (TAIR10) chr5:+:5078405..5078863
Molecular Weight (calculated) 12821.60 Da
IEP (calculated) 9.80
GRAVY (calculated) -0.91
Length 127 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKARGVNSG GGESSLGYLF GSGESVPKPN KPNAKTGFTT TTTTTTTTDG AGGRPKTTTT TTTTGDKNKT EENSAGVRGS PNNYYRSDGQ NCGNFLTERP
101: STKVHAAPGG GSSLGYLFGS GPCGSDK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)