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AT5G15570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bromodomain transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bromodomain transcription factor; CONTAINS InterPro DOMAIN/s: Bromodomain transcription factor (InterPro:IPR006565); BEST Arabidopsis thaliana protein match is: Bromodomain transcription factor (TAIR:AT3G02160.1); Has 201 Blast hits to 201 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZS4DeggNOG:KOG2389EMBL:AL391143EMBL:CP002688EnsemblPlants:AT5G15570EnsemblPlants:AT5G15570.1entrez:831410
GeneID:831410Gramene:AT5G15570.1hmmpanther:PTHR12321hmmpanther:PTHR12321:SF53HOGENOM:HOG000240226InterPro:IPR006565KEGG:ath:AT5G15570
KO:K14649OMA:RFPFNRGPfam:PF07524PhylomeDB:Q9LF25PIR:T51535Proteomes:UP000006548RefSeq:NP_197061.1
SMART:SM00576STRING:3702.AT5G15570.1TAIR:AT5G15570UniGene:At.31783UniProt:Q9LF25
Coordinates (TAIR10) chr5:+:5066851..5067996
Molecular Weight (calculated) 42671.10 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.68
Length 381 amino acids
Sequence (TAIR10)
(BLAST)
001: MINGGGEGGS QRRELQGKRS MSRGNDFAYA LARMATAQIC ESVEINSYQE SSQSREGLRF SSFQETALET LTDVVIQYIQ NIGKTAQFYV NMAGRVESNA
101: LDIVQALEDL GSGLGFDGAH DVEHCLADSG VVKDIIRYTG EAEEIPFVYS LPRFPFNRGK RPAPSFSDIG VEPPDEHIPV WLPAFPETKM SNGSEEINVD
201: KIERDVQSRD NGSSLMSVQQ SVDVDRLKVQ KSMDQKDVQK PIEEPEGNPF LAAPIWVGEK NVSLSRVVCP SELRKEEIST NHLPEKHMSM SHHIPALEAY
301: ALSDKINDKN RLAGMEDEQK RDGARTQGAL LRFKIGTRKA SECWKINQCL EEKGWFKEDG NKREKKVERE EKSESIDADV K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)