suba logo
AT5G15550.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), NLE (InterPro:IPR012972), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / notchless protein, putative (TAIR:AT5G52820.1); Has 33870 Blast hits to 20003 proteins in 673 species: Archae - 44; Bacteria - 4918; Metazoa - 12445; Fungi - 8096; Plants - 4252; Viruses - 0; Other Eukaryotes - 4115 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPW5eggNOG:KOG0313EMBL:AL391143EMBL:AY064011EMBL:AY091257EMBL:CP002688EnsemblPlants:AT5G15550
EnsemblPlants:AT5G15550.1entrez:831408ExpressionAtlas:Q9LF27Gene3D:2.130.10.10GeneID:831408GO:GO:0000463GO:GO:0000466
GO:GO:0005654GO:GO:0005730GO:GO:0009506GO:GO:0030687GO:GO:0043021GO:GO:0080008Gramene:AT5G15550.1
HAMAP:MF_03029hmmpanther:PTHR19855hmmpanther:PTHR19855:SF11HOGENOM:HOG000264464InterPro:IPR001680InterPro:IPR012972InterPro:IPR015943
InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472InterPro:IPR028599KEGG:ath:AT5G15550KO:K14863OMA:CTINLWN
Pfam:PF00400Pfam:PF08154Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9LF27PIR:T51533PRINTS:PR00320
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_197059.1scanprosite:PS00678SMART:SM00320
SMR:Q9LF27STRING:3702.AT5G15550.1SUPFAM:SSF50978TAIR:AT5G15550UniGene:At.27103UniProt:Q9LF27
Coordinates (TAIR10) chr5:-:5059051..5062003
Molecular Weight (calculated) 47340.20 Da
IEP (calculated) 5.61
GRAVY (calculated) -0.26
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MDIDGEDVSR RLHVKFVTKL DSPFKVPVNS VAIPSNVTRL GLSSIVNSII ESENPEWKTE PFDFLIDGEL IRMSLEEFLL AKGISAERTL EIEYIRAVTP
101: RKEEEPSLHD DWVSAVNGSS PRFILTGCYD GLGRVWSSAG SCSHILEGHS GAISSVALVN SNDAETVTVA TASKDRTLRL FKFDPAESVD STTKVRAYKI
201: LRGHKASVQS VSAQKSGNMV CSSSWDCTIN LWNTNESTSE GESVSVKKRK GNNQAEESQS EGEAVTSLVG HTQCVSSVVW PEHDVIYSSS WDHSVRRWDV
301: ETGKDSLNLF CGKALNTVDV GGESSALIAA GGSDPILRVW DPRKPGTSAP VFQFSSHSSW ISACKWHKSS WFHLLSASYD GKIMLWDLRT AWPLSVIDTH
401: NDKVLSADWW KGESVVSGGA DSNLRISSGI AIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)