AT5G15540.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : PHD finger family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of sister-chromatid cohesion and chromosome organization during meiosis. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 2773 (EMB2773); FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: centromere complex assembly, sister chromatid cohesion, embryo development ending in seed dormancy, meiotic sister chromatid cohesion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Armadillo-like helical (InterPro:IPR011989), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Armadillo-type fold (InterPro:IPR016024), Zinc finger, PHD-finger (InterPro:IPR019787); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:5047887..5057411 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 206770.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.91 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1846 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSNPSSSGLG SSSGLTHFGI GLANTVQSEV TPYLPLPSLP IFCGAAEPGE FKLFDEVGQG SGYRSLDRSE ILAQSSRIAN MLHETDVSYL DLRNEARAPD 0101: CNSGEHFQLY DLVLRCNPGA FEYVTPGPTC DPLFTNEGPQ KIISEPSVPV KMQRQTDTHL ARSIEPEPVK RVLRPNHVED HSWQHETLTN QSPKDVTAYD 0201: SRPETITMNE LSASKKPKGK KKRKDDLSSV QPDPSVLQES IVQNFCEMLE DFCGRAEVPG DDRDEAEWSS VPVDEVRVLI NELMTIRSKM LLHMVPVDIL 0301: SRLLRTLDHQ IHRAEGLSIY SEHSDSDSVL LVLGALESIH ASLAVMANSD MPKQLYKEEI IERILEFSRH QMMAVMSAYD PSYRTGSKPA ENLAFEGDDD 0401: DDNPDHDMGS ASKRRRIVKN SKVKKASVNR ISGAVNTALQ KLCTILGLLK DLLLVERLSD SCILQLLKTS ITTFLVENIQ ILQLKAISLI GGIYNSYSQH 0501: RTYVIDEISQ LLWKLPSSKR ALRAYLLPDE EQRQIQMVTA LLIQLVHNST SLPETSRQAA SGNSILETSV DVGYLTKCHE AATETCCLFW TRVLERFTSF 0601: KGQDASEIKL IIENLVMDLL TALNLPEYPS VSPILEVLCV ILLHNAGLKS KDVSARIMAI ELLGTIAARL KRDAVLCSKD RFWTLLESDS EISVDQVCTK 0701: DCTFCLGKRA GNLLVCQICQ RRFHGDCLGL KELDISSRNW HCPLCVCKRQ LLVLQSYCKT DTKGTGKLES EESIENPSMI TKTEVVQQML LNYLQDVGSA 0801: DDVHTFICWF YLCLWYKDVP KSQNKFKYYI ARLKAKSIIR NSGATTSFLT RDAIKQITLA LGMNSSFSRG FDKILNMLLA SLRENAPNIR AKALRAVSII 0901: VEADPEVLCD KRVQLAVEGR FCDSAISVRE AALELVGRHI ASHPDVGIKY FEKVAERIKD TGVSVRKRAI KIIRDMCTSN PNFSEFTSAC AEILSRISDD 1001: ESSVQDLVCK TFYEFWFEEP PGHHTQFASD ASSIPLELEK KTKQMVGLLS RTPNQQLLVT IIKRALALDF FPQAAKAAGI NPVALASVRR RCELMCKCLL 1101: EKILQVEEMS REEGEVQVLP YVLVLHAFCL VDPGLCTPAS DPTKFVITLQ PYLKSQADSR TGAQLLESII FIIDSVLPLI RKLPLSVTED LEQDLKHMIV 1201: RHSFLTVVHA CVRCLCSVSK LAGKGVSIVE HLLQFFFKRL EAQGSDNTQI AGRSLFCLGL LIRHGNSLIS TSGGKNFNLS GCLNLFKRHL RTEDIALKVR 1301: SLQALGFILI ARPEYMLEED IGKIIETTLA DEANGRMKMQ ALQNMYEYLL DAEKQLGSEK ASDNTVNSVE QGGHNVPVAA GAGDTNICGG IVQLFWDKIL 1401: GRCLDFDDQI RQTSLKIVEV VLRQGLVHPI TCVPYLIALE TDPQEANQKL AHHLLMNMHE KYPAFFESRL GDGLQMSFIF MQSISQVTSE PNQSLQQKGS 1501: TNMLGKNDHA SSTLTQARLG VSRIYKLIRG NRVSRNKFMT SIVRKFDNPT WNGSVISFLK YCTETLALLP FTSPDEPLYL VYSINRVMQI RAGAVESNLK 1601: ALLHKDSAKT QHGNGAYQQD PIPGHMNMMD LNTRIQEEPR HWNSYGHATL IDLNGSVYQD SRDQFTSYQV HNGKADVHKM TSSDPPELST DDLQKIQVDC 1701: LAAIAIQLLL KLKRYLKVTY SLNDDRCQAY SPTEPLKPGD PLSRQSVAFD LSETRTDLPS TYQDLVQRYQ EFKNAMREDT VDFTIYSTNV KRKRPTPRKT 1801: SRSAKKTVAY NEDDDDDDND DRGWHGGGGR GAARRLNYST RSSNRR |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)