AT5G15510.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : TPX2 (targeting protein for Xklp2) protein family | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TPX2 (targeting protein for Xklp2) protein family; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT3G01015.1); Has 1184 Blast hits to 1000 proteins in 137 species: Archae - 0; Bacteria - 15; Metazoa - 507; Fungi - 52; Plants - 301; Viruses - 3; Other Eukaryotes - 306 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:5034120..5036614 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56485.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.04 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.00 | ||||||||||||||||||||||||||||||||
| Length | 497 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESLTLKNGK AGTPVKDRSK FQSNQKISRS SENANPNISQ ASPSKSPLMK SAKKSAQKNP SPSPKPTQAV FSPRNRIRER KFVVVAKKNS RKGKKEPAIT 101: ESKAAEIDCK CGERKKGNMK CVCVAYETLR ASQEEFFKNR IESEEDKEAL EECCNLGNGD ELEGKESGEP EKTGVSTMKR SRAKVVEEAR QSVPVSGKVM 201: NLVEAFEKLT CFSNSKTANK IEENQTEEDT KKPVKLEFLE GEKEKNPWSS SFCPSEMVLT AKNLGLDPNA SISSSWDSTR GSVLSGSSNA GRRSRRNSME 301: SSTTMGSRRS KKKQVKVTSL KPFKLRTEQR GKVKEEELAK KIHEITMEEE KMRIPIAQGL PWTTDEPECL VKPHWKDITR PVDLTLHSDV RAVERAEFDY 401: QVAEKMSFIE QYKMERERQQ KLAEEEEIRR LRKELVPKAQ PMPYFDRPFI PRRSSKHPTA PRDPKFHIPQ HKKIRCCSSS SWSETGSCMS DFQYQFL |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)