AT5G15390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tRNA/rRNA methyltransferase (SpoU) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 11780 Blast hits to 11778 proteins in 2508 species: Archae - 10; Bacteria - 9274; Metazoa - 151; Fungi - 61; Plants - 151; Viruses - 0; Other Eukaryotes - 2133 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4995333..4997255 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38856.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.10 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||
| Length | 350 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSCKSLIRA SISSFPFVPL PNPNFSITFI SVRAFSPLSV LHPNSSCIVT ARRTFHGAVA LSPESLTEES PKDTVKGLLT TNRGEASSLM KMERRCSLSN 101: GEGDCRGSWF PYEDRFRCGE VHLSSREVLE AVSPHMMEER TDRFRRVVEN RSYSVCLVVE GLSDFGNISA AFRSADALGI QSVHVVSCDS SKRYNGNRHV 201: SMGAEKWLDI EFWDTPKECF KVLKSRGYRI ATTHLGMDTV SIYDMDWSCP TAIVVGNEGR GISDEALELS DLRCSIPMNG MVDSFNVSVA AGILMHHAVS 301: DRTTRLGSHG DLSEAEKEIL MAEFSLRHSR SSICIAYEFA KRKQQHSTSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)