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AT5G15350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 14517339
AmiGO : plasma membrane 17317660
AmiGO : vacuole 15539469
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : vacuole 15539469
TAIR : plasma membrane 14517339
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:26091700 (2015): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:20843791 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16635983 (2006): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:14517339 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : early nodulin-like protein 17
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
early nodulin-like protein 17 (ENODL17); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to plasma membrane, plasma membrane, vacuole, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: early nodulin-like protein 19 (TAIR:AT4G12880.1); Has 1394 Blast hits to 1353 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1394; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:16664eggNOG:ENOG410IX53eggNOG:ENOG410ZMPKEMBL:AF083713EMBL:AF424627EMBL:AL353993EMBL:BT002308
EMBL:CP002688EMBL:U77721EMBL:X97023EnsemblPlants:AT5G15350EnsemblPlants:AT5G15350.1entrez:831387Gene3D:2.60.40.420
GeneID:831387Genevisible:Q39131GO:GO:0005773GO:GO:0005886GO:GO:0009055GO:GO:0031225GO:GO:0046658
Gramene:AT5G15350.1hmmpanther:PTHR33021hmmpanther:PTHR33021:SF63HOGENOM:HOG000237627InParanoid:Q39131InterPro:IPR003245InterPro:IPR008972
iPTMnet:Q39131KEGG:ath:AT5G15350OMA:YEGCIADPaxDb:Q39131Pfam:PF02298Pfam:Q39131Pfscan:PS51485
PhylomeDB:Q39131PIR:S71273PRIDE:Q39131PRO:PR:Q39131ProDom:PD003122PROSITE:PS51485ProteinModelPortal:Q39131
Proteomes:UP000006548RefSeq:NP_197039.1SMR:Q39131STRING:3702.AT5G15350.1SUPFAM:SSF49503TAIR:AT5G15350tair10-symbols:AtENODL17
tair10-symbols:ENODL17TMHMM:TMhelixUniGene:At.24543UniProt:Q39131
Coordinates (TAIR10) chr5:-:4985184..4986154
Molecular Weight (calculated) 19435.80 Da
IEP (calculated) 9.86
GRAVY (calculated) 0.01
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MARFTVLITA VVLAFLMAAP MPGVTAKKYT VGENKFWNPN INYTIWAQGK HFYLGDWLYF VFDRNQHNIL EVNKTDYEGC IADHPIRNWT RGAGRDIVTL
101: NQTKHYYLLD GKGGCYGGMK LSVKVEKLPP PPKSAPVKNI GSVSMVTGLA QFMIPVSLFA FPAMWDVISR MW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)