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AT5G15340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 30617 Blast hits to 12777 proteins in 204 species: Archae - 0; Bacteria - 4; Metazoa - 33; Fungi - 16; Plants - 30223; Viruses - 0; Other Eukaryotes - 341 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL353993EMBL:CP002688EnsemblPlants:AT5G15340EnsemblPlants:AT5G15340.1entrez:831386
GeneID:831386Genevisible:Q9LXE8GO:GO:0005739GO:GO:0008270Gramene:AT5G15340.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF640
HOGENOM:HOG000237569InParanoid:Q9LXE8InterPro:IPR002885InterPro:IPR032867KEGG:ath:AT5G15340OMA:KQDKANSPaxDb:Q9LXE8
Pfam:PF01535Pfam:PF13041Pfam:PF14432Pfam:Q9LXE8Pfscan:PS51375PhylomeDB:Q9LXE8PIR:T49969
PRIDE:Q9LXE8PRO:PR:Q9LXE8PROSITE:PS51375ProteinModelPortal:Q9LXE8Proteomes:UP000006548RefSeq:NP_197038.1SMR:Q9LXE8
STRING:3702.AT5G15340.1TAIR:AT5G15340TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.66725UniProt:Q9LXE8
Coordinates (TAIR10) chr5:-:4982273..4984144
Molecular Weight (calculated) 70090.70 Da
IEP (calculated) 8.01
GRAVY (calculated) -0.03
Length 623 amino acids
Sequence (TAIR10)
(BLAST)
001: MKCLSYQKVR LLLRHCAHRS FLRPGKELHA VLTTSGLKKA PRSYLSNALF QFYASSGEMV TAQKLFDEIP LSEKDNVDWT TLLSSFSRYG LLVNSMKLFV
101: EMRRKRVEID DVSVVCLFGV CAKLEDLGFA QQGHGVAVKM GVLTSVKVCN ALMDMYGKCG LVSEVKRIFE ELEEKSVVSW TVVLDTVVKW EGLERGREVF
201: HEMPERNAVA WTVMVAGYLG AGFTREVLEL LAEMVFRCGH GLNFVTLCSM LSACAQSGNL VVGRWVHVYA LKKEMMMGEE ASYDDVMVGT ALVDMYAKCG
301: NIDSSMNVFR LMRKRNVVTW NALFSGLAMH GKGRMVIDMF PQMIREVKPD DLTFTAVLSA CSHSGIVDEG WRCFHSLRFY GLEPKVDHYA CMVDLLGRAG
401: LIEEAEILMR EMPVPPNEVV LGSLLGSCSV HGKVEIAERI KRELIQMSPG NTEYQILMSN MYVAEGRSDI ADGLRGSLRK RGIRKIPGLS SIYVNDSVHR
501: FSSGDRSHPR TKEIYLKLNE VIERIRSAGY VPDVSGLVSH SEGDLEEKEQ ALCCHSEKLA VCFGLLETKP STPLLVFKNL RICRDCHSAM KIVSKVYDRE
601: IIIRDRNRFH QFKGGSCSCS DYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)