AT5G15300.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 0.891 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G29230.1); Has 37071 Blast hits to 13818 proteins in 252 species: Archae - 0; Bacteria - 21; Metazoa - 136; Fungi - 146; Plants - 36104; Viruses - 0; Other Eukaryotes - 664 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:4968384..4970030 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 62115.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.28 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 548 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MIRRQTNDRT TNRRRPKLWQ NCKNIRTLKQ IHASMVVNGL MSNLSVVGEL IYSASLSVPG ALKYAHKLFD EIPKPDVSIC NHVLRGSAQS MKPEKTVSLY 101: TEMEKRGVSP DRYTFTFVLK ACSKLEWRSN GFAFHGKVVR HGFVLNEYVK NALILFHANC GDLGIASELF DDSAKAHKVA WSSMTSGYAK RGKIDEAMRL 201: FDEMPYKDQV AWNVMITGCL KCKEMDSARE LFDRFTEKDV VTWNAMISGY VNCGYPKEAL GIFKEMRDAG EHPDVVTILS LLSACAVLGD LETGKRLHIY 301: ILETASVSSS IYVGTPIWNA LIDMYAKCGS IDRAIEVFRG VKDRDLSTWN TLIVGLALHH AEGSIEMFEE MQRLKVWPNE VTFIGVILAC SHSGRVDEGR 401: KYFSLMRDMY NIEPNIKHYG CMVDMLGRAG QLEEAFMFVE SMKIEPNAIV WRTLLGACKI YGNVELGKYA NEKLLSMRKD ESGDYVLLSN IYASTGQWDG 501: VQKVRKMFDD TRVKKPTGVS LIEEDDDKLM MRYLLSSEPE SRSRGRIN |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)