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AT5G15280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1); Has 34111 Blast hits to 7189 proteins in 218 species: Archae - 2; Bacteria - 9; Metazoa - 117; Fungi - 126; Plants - 33142; Viruses - 0; Other Eukaryotes - 715 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AK227133EMBL:AL353993EMBL:CP002688EnsemblPlants:AT5G15280EnsemblPlants:AT5G15280.1
entrez:831380GeneID:831380Genevisible:Q9LXF4Gramene:AT5G15280.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF787HOGENOM:HOG000115641
InParanoid:Q9LXF4InterPro:IPR002885KEGG:ath:AT5G15280OMA:WGVIEEAPaxDb:Q9LXF4Pfam:PF01535Pfam:PF13041
Pfam:PF13812Pfam:Q9LXF4Pfscan:PS51375PhylomeDB:Q9LXF4PIR:T49963PRIDE:Q9LXF4PRO:PR:Q9LXF4
PROSITE:PS51375ProteinModelPortal:Q9LXF4Proteomes:UP000006548RefSeq:NP_197032.1STRING:3702.AT5G15280.1TAIR:AT5G15280TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.31825UniProt:Q9LXF4
Coordinates (TAIR10) chr5:+:4962293..4965976
Molecular Weight (calculated) 139617.00 Da
IEP (calculated) 7.62
GRAVY (calculated) -0.13
Length 1227 amino acids
Sequence (TAIR10)
(BLAST)
0001: MLNLLSISSS SRLRFLNKVS SLTYHYSFAF FSTSSPASSS SSSLGNDSAI PRNYESSSFN LLSRSKEKRD LTGSSLKDLL FDLSDVVPNI TRRFRRFPGL
0101: KPEDVLELSL GFESELQRGG IGNIKVQALW EIFRWASVQY QGFKHLPQAC EIMASMLIRE GMVKEVELLL MEMERHGDTM VNEGIFCDLI GKYVDDFDSR
0201: KAVMLFDWMR RKGLVPLTSC YQILIDQLVR VHRTESAYRI CLDWVETRAE LNHMNIDSIG KVIELLCLDQ KVQEARVLAR KLVALGCILN SSIYSKITIG
0301: YNEKQDFEDL LSFIGEVKYE PDVFVGNRIL HSLCRRFGSE RAYVYMEELE HLGFKQDEVT FGILIGWCCY EGDIKRAVLY LSEIMSKGYK PDVYSYNAIL
0401: SGLFRKGLWQ HTHCILDEMK ENGMMLSLST FKIMVTGYCK ARQFEEAKRI VNKMFGYGLI EASKVEDPLS EAFSLVGFDP LAVRLKRDND STFSKAEFFD
0501: DLGNGLYLHT DLDAYEQRVN MVLDRSVLPE FNSLIVRASE DGDLQTALRL LDEMARWGQK LSRRSFAVLM RSLCASRAHL RVSISLLEKW PKLAYQLDGE
0601: TLNFLVQEYC KKGFSRHSKL IFHKMVQMHH PIDNVTYTSL IRCFCKKETL NDLLNVWGAA QNDNWLPDLN DCGDLWNCLV RKGLVEEVVQ LFERVFISYP
0701: LSQSEACRIF VEKLTVLGFS CIAHSVVKRL EGEGCIVEQE VYNHLIKGLC TEKKDSAAFA ILDEMLDKKH IPSLGSCLML IPRLCRANKA GTAFNLAEQI
0801: DSSYVHYALI KGLSLAGKML DAENQLRIML SNGLSSYNKI YNVMFQGYCK GNNWMKVEEV LGLMVRKNII CSVKSYREYV RKMCLEPQSL SAISLKEFLL
0901: LGESNPGGVI IYNMLIFYMF RAKNHLEVNK VLLEMQGRGV LPDETTFNFL VHGYSSSADY SSSLRYLSAM ISKGMKPNNR SLRAVTSSLC DNGDVKKALD
1001: LWQVMESKGW NLGSSVVQTK IVETLISKGE IPKAEDFLTR VTRNGMMAPN YDNIIKKLSD RGNLDIAVHL LNTMLKNQSI PGSSSYDSVI NGLLRYNQLD
1101: KAMDFHTEMV ELGLSPSIST WSGLVHKFCE ACQVLESERL IKSMVGLGES PSQEMFKTVI DRFRVEKNTV KASEMMEMMQ KCGYEVDFET HWSLISNMSS
1201: SKEKKTTTAG EGFLSRLLSG NGFTWKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)