AT5G15280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1); Has 34111 Blast hits to 7189 proteins in 218 species: Archae - 2; Bacteria - 9; Metazoa - 117; Fungi - 126; Plants - 33142; Viruses - 0; Other Eukaryotes - 715 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4962293..4965976 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 139617.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.62 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1227 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MLNLLSISSS SRLRFLNKVS SLTYHYSFAF FSTSSPASSS SSSLGNDSAI PRNYESSSFN LLSRSKEKRD LTGSSLKDLL FDLSDVVPNI TRRFRRFPGL 0101: KPEDVLELSL GFESELQRGG IGNIKVQALW EIFRWASVQY QGFKHLPQAC EIMASMLIRE GMVKEVELLL MEMERHGDTM VNEGIFCDLI GKYVDDFDSR 0201: KAVMLFDWMR RKGLVPLTSC YQILIDQLVR VHRTESAYRI CLDWVETRAE LNHMNIDSIG KVIELLCLDQ KVQEARVLAR KLVALGCILN SSIYSKITIG 0301: YNEKQDFEDL LSFIGEVKYE PDVFVGNRIL HSLCRRFGSE RAYVYMEELE HLGFKQDEVT FGILIGWCCY EGDIKRAVLY LSEIMSKGYK PDVYSYNAIL 0401: SGLFRKGLWQ HTHCILDEMK ENGMMLSLST FKIMVTGYCK ARQFEEAKRI VNKMFGYGLI EASKVEDPLS EAFSLVGFDP LAVRLKRDND STFSKAEFFD 0501: DLGNGLYLHT DLDAYEQRVN MVLDRSVLPE FNSLIVRASE DGDLQTALRL LDEMARWGQK LSRRSFAVLM RSLCASRAHL RVSISLLEKW PKLAYQLDGE 0601: TLNFLVQEYC KKGFSRHSKL IFHKMVQMHH PIDNVTYTSL IRCFCKKETL NDLLNVWGAA QNDNWLPDLN DCGDLWNCLV RKGLVEEVVQ LFERVFISYP 0701: LSQSEACRIF VEKLTVLGFS CIAHSVVKRL EGEGCIVEQE VYNHLIKGLC TEKKDSAAFA ILDEMLDKKH IPSLGSCLML IPRLCRANKA GTAFNLAEQI 0801: DSSYVHYALI KGLSLAGKML DAENQLRIML SNGLSSYNKI YNVMFQGYCK GNNWMKVEEV LGLMVRKNII CSVKSYREYV RKMCLEPQSL SAISLKEFLL 0901: LGESNPGGVI IYNMLIFYMF RAKNHLEVNK VLLEMQGRGV LPDETTFNFL VHGYSSSADY SSSLRYLSAM ISKGMKPNNR SLRAVTSSLC DNGDVKKALD 1001: LWQVMESKGW NLGSSVVQTK IVETLISKGE IPKAEDFLTR VTRNGMMAPN YDNIIKKLSD RGNLDIAVHL LNTMLKNQSI PGSSSYDSVI NGLLRYNQLD 1101: KAMDFHTEMV ELGLSPSIST WSGLVHKFCE ACQVLESERL IKSMVGLGES PSQEMFKTVI DRFRVEKNTV KASEMMEMMQ KCGYEVDFET HWSLISNMSS 1201: SKEKKTTTAG EGFLSRLLSG NGFTWKR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)