suba logo
AT5G15260.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein L34e superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L34e superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: Ribosomal protein L34e superfamily protein (TAIR:AT3G01170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWGCeggNOG:ENOG4111QF9EMBL:AK228532EMBL:AY072017
EMBL:AY122889EMBL:CP002688EnsemblPlants:AT5G15260EnsemblPlants:AT5G15260.1
entrez:831378GeneID:831378GO:GO:0003735GO:GO:0005840
GO:GO:0006412GO:GO:0016021Gramene:AT5G15260.1hmmpanther:PTHR10759
hmmpanther:PTHR10759:SF8IntAct:Q8VYH4InterPro:IPR008195KEGG:ath:AT5G15260
OMA:LPRDHHKPANTHER:PTHR10759PhylomeDB:Q8VYH4Proteomes:UP000006548
RefSeq:NP_197030.2TAIR:AT5G15260TMHMM:TMhelixUniGene:At.28272
UniProt:Q8VYH4
Coordinates (TAIR10) chr5:-:4953646..4954350
Molecular Weight (calculated) 25859.50 Da
IEP (calculated) 9.60
GRAVY (calculated) -0.12
Length 234 amino acids
Sequence (TAIR10)
(BLAST)
001: MVYFQNSISL VDQSPIMAHS PDFHHHSKQS RTSSSNRKSS SSSCSSNFSV CCDGSRSAAI DVVILIAVIT SSGFLIFPYI KFITIKSVEI FSELSCLVKE
101: EILRNPDPIV YGLIALSISC TALSAWMIVI LLCSRHRCGK PNCKGLRKAN AEFDIQLETE DCVKSSNSGK SVSKKGLFEL PRDHHRELEA ELKKMAPPNG
201: RAVLVFRAKC GCSVGRLEVP GPKKQQLQQR KVKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)