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AT5G15230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GAST1 protein homolog 4
Curator
Summary (TAIR10)
gibberellin-regulated (GASA4)
Computational
Description (TAIR10)
GAST1 protein homolog 4 (GASA4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to gibberellin stimulus, gibberellic acid mediated signaling pathway; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT1G74670.1); Has 476 Blast hits to 476 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 476; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:16652eggNOG:ENOG410JCJZeggNOG:ENOG410YQ6UEMBL:AF360199EMBL:AL353993EMBL:AY040048EMBL:AY057601
EMBL:CP002688EMBL:U15683EMBL:X98255EnsemblPlants:AT5G15230EnsemblPlants:AT5G15230.1entrez:831375ExpressionAtlas:P46690
GeneID:831375Genevisible:P46690GO:GO:0005576GO:GO:0005623GO:GO:0009739GO:GO:0009740GO:GO:0045454
hmmpanther:PTHR23201hmmpanther:PTHR23201:SF21HOGENOM:HOG000240234InParanoid:P46690IntAct:P46690InterPro:IPR003854OMA:ECDRRCK
PaxDb:P46690Pfam:P46690Pfam:PF02704PhylomeDB:P46690PIR:S60232PIR:T49958PRIDE:P46690
PRO:PR:P46690ProteinModelPortal:P46690Proteomes:UP000006548RefSeq:NP_197027.1STRING:3702.AT5G15230.1TAIR:AT5G15230tair10-symbols:GASA4
TMHMM:TMhelixUniGene:At.24725UniProt:P46690
Coordinates (TAIR10) chr5:+:4945017..4946025
Molecular Weight (calculated) 11996.80 Da
IEP (calculated) 9.57
GRAVY (calculated) -0.38
Length 106 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKSYGAIFL LTLIVLFMLQ TMVMASSGSN VKWSQKRYGP GSLKRTQCPS ECDRRCKKTQ YHKACITFCN KCCRKCLCVP PGYYGNKQVC SCYNNWKTQE
101: GGPKCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)