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AT5G15200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S4; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), Ribosomal protein S4, conserved site (InterPro:IPR018079), Ribosomal protein S4/S9, eukaryotic/archaeal (InterPro:IPR005710), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (TAIR:AT5G39850.1); Has 5786 Blast hits to 5783 proteins in 2880 species: Archae - 264; Bacteria - 571; Metazoa - 422; Fungi - 281; Plants - 3526; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink).
Protein Annotations
BioGrid:16649eggNOG:COG0522eggNOG:KOG3301EMBL:AK228437EMBL:AL353993EMBL:BT010847EMBL:BT011315
EMBL:CP002688EnsemblPlants:AT5G15200EnsemblPlants:AT5G15200.1entrez:831372ExpressionAtlas:Q9LXG1Gene3D:3.10.290.10GeneID:831372
Genevisible:Q9LXG1GO:GO:0003735GO:GO:0005618GO:GO:0005730GO:GO:0005774GO:GO:0005829GO:GO:0006412
GO:GO:0009506GO:GO:0009507GO:GO:0016020GO:GO:0019843GO:GO:0022626GO:GO:0022627hmmpanther:PTHR11831
hmmpanther:PTHR11831:SF11HOGENOM:HOG000194525InParanoid:Q9LXG1IntAct:Q9LXG1InterPro:IPR001912InterPro:IPR002942InterPro:IPR005710
InterPro:IPR018079InterPro:IPR022801iPTMnet:Q9LXG1OMA:TIVYRKGPANTHER:PTHR11831PaxDb:Q9LXG1Pfam:PF00163
Pfam:PF01479Pfam:Q9LXG1Pfscan:PS50889PhylomeDB:Q9LXG1PIR:T49955PRIDE:Q9LXG1PRO:PR:Q9LXG1
PROSITE:PS00632PROSITE:PS50889ProteinModelPortal:Q9LXG1Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689
Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_197024.1scanprosite:PS00632
SMART:SM00363SMART:SM01390SMR:Q9LXG1STRING:3702.AT5G15200.1SUPFAM:SSF55174TAIR:AT5G15200TIGRfam:TIGR01018
TIGRFAMs:TIGR01018UniGene:At.1767UniProt:Q9LXG1
Coordinates (TAIR10) chr5:-:4935124..4936334
Molecular Weight (calculated) 23037.80 Da
IEP (calculated) 10.75
GRAVY (calculated) -0.78
Length 198 amino acids
Sequence (TAIR10)
(BLAST)
001: MVHVCYYRNY GKTFKGPRRP YEKERLDSEL KLVGEYGLRN KRELWRVQYS LSRIRNAARD LLTLDEKSPR RIFEGEALLR RMNRYGLLDE SQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHSRVL IRQRHIRVGK QLVNIPSFMV RLDSQKHIDF ALTSPFGGGR PGRVKRRNEK SASKKASGGG DADGDDEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)