suba logo
AT5G15190.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JIK0eggNOG:ENOG41114U9EMBL:AK119079EMBL:BT004712EMBL:CP002688EnsemblPlants:AT5G15190EnsemblPlants:AT5G15190.1
EnsemblPlants:AT5G15190.2entrez:831371GeneID:831371GO:GO:0009507Gramene:AT5G15190.1Gramene:AT5G15190.2HOGENOM:HOG000148308
IntAct:Q8GW49KEGG:ath:AT5G15190OMA:ESWPEMEProteomes:UP000006548RefSeq:NP_197023.2RefSeq:NP_850823.1STRING:3702.AT5G15190.1
TAIR:AT5G15190UniGene:At.31834UniProt:Q8GW49
Coordinates (TAIR10) chr5:-:4933148..4933498
Molecular Weight (calculated) 13278.80 Da
IEP (calculated) 5.98
GRAVY (calculated) -0.72
Length 116 amino acids
Sequence (TAIR10)
(BLAST)
001: MMTMGGREAE SWPEMEAIAR KMVEEVETES SGSSEAETES PRSVGRWITA KEKVHNQVLK IREEDLCVLV EDKVTNPEDR RYLRPRRFNL FLISRQNLPC
101: SPLSGKGRSV NVVQTQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)