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AT5G15170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.975
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tyrosyl-DNA phosphodiesterase-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tyrosyl-DNA phosphodiesterase-related; FUNCTIONS IN: 3'-tyrosyl-DNA phosphodiesterase activity; INVOLVED IN: DNA repair; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tyrosyl-DNA phosphodiesterase (InterPro:IPR010347), SMAD/FHA domain (InterPro:IPR008984); BEST Arabidopsis thaliana protein match is: forkhead-associated domain-containing protein / FHA domain-containing protein (TAIR:AT5G07400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BRENDA:3.1.4.1EC:3.1.4.-eggNOG:ENOG410XQPZeggNOG:KOG2031EMBL:AL353993EMBL:AY064005EMBL:AY150498
EMBL:CP002688EMBL:FJ858738EnsemblPlants:AT5G15170EnsemblPlants:AT5G15170.1entrez:831369Gene3D:2.60.200.20Gene3D:3.30.870.20
GeneID:831369Genevisible:Q8H1D9GO:GO:0004527GO:GO:0005634GO:GO:0006281GO:GO:0017005Gramene:AT5G15170.1
hmmpanther:PTHR12415hmmpanther:PTHR12415:SF0HOGENOM:HOG000067775InParanoid:Q8H1D9IntAct:Q8H1D9InterPro:IPR000253InterPro:IPR008984
InterPro:IPR010347InterPro:IPR027415KEGG:ath:AT5G15170KO:K10862OMA:WTNTSSVPANTHER:PTHR12415PaxDb:Q8H1D9
Pfam:PF06087PhylomeDB:Q8H1D9PIR:T49952PRIDE:Q8H1D9PRO:PR:Q8H1D9ProteinModelPortal:Q8H1D9Proteomes:UP000006548
RefSeq:NP_197021.2SMR:Q8H1D9STRING:3702.AT5G15170.1SUPFAM:SSF49879SUPFAM:SSF56024TAIR:AT5G15170tair10-symbols:TDP1
UniGene:At.27105UniProt:Q8H1D9
Coordinates (TAIR10) chr5:-:4926300..4929307
Molecular Weight (calculated) 68142.70 Da
IEP (calculated) 9.18
GRAVY (calculated) -0.37
Length 605 amino acids
Sequence (TAIR10)
(BLAST)
001: MAHSQVAYLI PLKADLKEDN SSPRITLSEG PNIIGRGNVS IVDKRLSRKH ITIIVSTSGS ASLSVDGTNP VVIRSSGDGE RKKVKPSEEV SVCNDDLIEL
101: IPGHHFFKLV LLNGRAAKKA RKAEDDVEAI RRFCPPNEKL PSTFRLLSVD ALPDWANTSC VSINDVIEGD VVAAILSNYM VDIDWLMSAC PKLANIPQVM
201: VIHGEGDGRQ EYIQRKKPAN WILHKPRLPI SFGTHHSKAI FLVYPRGVRV VVHTANLIHV DWNNKSQGLW MQDFPWKDDD KDPPKGCGFE GDLIDYLNVL
301: KWPEFTANLP GRGNVKINAA FFKKFDYSDA TVRLIASVPG YHTGFNLNKW GHMKLRTILQ ECIFDREFRR SPLIYQFSSL GSLDEKWLAE FGNSLSSGIT
401: EDKTPLGPGD SLIIWPTVED VRCSLEGYAA GNAIPSPLKN VEKPFLKKYW ARWKADHSAR GRAMPHIKTF TRYNDQKIAW FLLTSSNLSK AAWGALQKNN
501: SQLMIRSYEL GVLFLPSPIK TQGCVFSCTE SNPSVMKAKQ ETKDEVEKRS KLVTMTWQGD RDLPEIISLP VPYQLPPKPY SPEDVPWSWD RGYSKKDVYG
601: QVWPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)