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AT5G15150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homeobox 3
Curator
Summary (TAIR10)
homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem.
Computational
Description (TAIR10)
homeobox 3 (HB-3); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 20 (TAIR:AT3G01220.1); Has 11268 Blast hits to 11217 proteins in 570 species: Archae - 0; Bacteria - 6; Metazoa - 8826; Fungi - 177; Plants - 2030; Viruses - 5; Other Eukaryotes - 224 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:BT044059EnsemblPlants:AT5G15150EnsemblPlants:AT5G15150.1entrez:831367ExpressionAtlas:B5RID5
Gene3D:1.10.10.60GeneID:831367GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0043565Gramene:AT5G15150.1
hmmpanther:PTHR24326hmmpanther:PTHR24326:SF264InParanoid:Q00466InterPro:IPR000047InterPro:IPR001356InterPro:IPR003106InterPro:IPR009057
InterPro:IPR017970KEGG:ath:AT5G15150KO:K09338ncoils:CoilOMA:DQDQVGEPaxDb:B5RID5Pfam:PF00046
Pfam:PF02183Pfam:Q00466Pfscan:PS50071PhylomeDB:B5RID5PRINTS:PR00031PROSITE:PS00027PROSITE:PS50071
ProteinModelPortal:B5RID5RefSeq:NP_568309.2scanprosite:PS00027SMART:SM00389SMR:B5RID5STRING:3702.AT5G15150.1SUPFAM:SSF46689
TAIR:AT5G15150tair10-symbols:ATHB-3tair10-symbols:ATHB3tair10-symbols:HAT7tair10-symbols:HB-3UniGene:At.49022UniProt:B5RID5
UniProt:Q00466
Coordinates (TAIR10) chr5:-:4913951..4915609
Molecular Weight (calculated) 36284.10 Da
IEP (calculated) 6.87
GRAVY (calculated) -1.06
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MYMYEEERNN INNNQEGLRL EMAFPQHGFM FQQLHEDNAH HLPSPTSLPS CPPHLFYGGG GNYMMNRSMS FTGVSDHHHL TQKSPTTTNN MNDQDQVGEE
101: DNLSDDGSHM MLGEKKKRLN LEQVRALEKS FELGNKLEPE RKMQLAKALG LQPRQIAIWF QNRRARWKTK QLERDYDSLK KQFDVLKSDN DSLLAHNKKL
201: HAELVALKKH DRKESAKIKR EFAEASWSNN GSTENNHNNN SSDANHVSMI KDLFPSSIRS ATATTTSTHI DHQIVQDQDQ GFCNMFNGID ETTSASYWAW
301: PDQQQQHHNH HQFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)