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AT5G15110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectate lyase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT3G01270.1); Has 1602 Blast hits to 1594 proteins in 273 species: Archae - 0; Bacteria - 694; Metazoa - 0; Fungi - 171; Plants - 721; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G15110-MONOMERCAZy:PL1EC:4.2.2.2eggNOG:COG3866eggNOG:ENOG410II3GEMBL:AL391146EMBL:CP002688
EMBL:DQ653286EnsemblPlants:AT5G15110EnsemblPlants:AT5G15110.1entrez:831363Gene3D:2.160.20.10GeneID:831363Genevisible:Q9LFP5
GO:GO:0030570GO:GO:0045490GO:GO:0046872Gramene:AT5G15110.1hmmpanther:PTHR31683hmmpanther:PTHR31683:SF7HOGENOM:HOG000237948
InParanoid:Q9LFP5InterPro:IPR002022InterPro:IPR007524InterPro:IPR011050InterPro:IPR012334InterPro:IPR018082iPTMnet:Q9LFP5
KEGG:00040+4.2.2.2KEGG:ath:AT5G15110KO:K01728PaxDb:Q9LFP5Pfam:PF00544Pfam:PF04431Pfam:Q9LFP5
PhylomeDB:Q9LFP5PIR:T51456PRIDE:Q9LFP5PRINTS:PR00807PRO:PR:Q9LFP5ProteinModelPortal:Q9LFP5Proteomes:UP000006548
RefSeq:NP_197015.4SMART:SM00656SMR:Q9LFP5STRING:3702.AT5G15110.1SUPFAM:SSF51126TAIR:AT5G15110UniGene:At.50708
UniPathway:UPA00545UniProt:Q9LFP5
Coordinates (TAIR10) chr5:+:4895966..4897682
Molecular Weight (calculated) 53840.00 Da
IEP (calculated) 9.36
GRAVY (calculated) -0.64
Length 472 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMVRLSKLM FTFCIAVLIP TIRGNISELD EYWSQRADEA REFTLQAYHS DPYEIVDHFH ERHYDNSTDV TTPEEDGDAK PEEEEKEFIE MLGSSTNSTR
101: RSLRGKGKGK WSKLKGPCTA SNPIDKCWRC RSDWAKRRKK LTRCVRGFGH RTTGGKRGRI YVVTSNLDED MVNPKPGTLR HAVIQKEPLW IIFKNDMSIR
201: LNQELLINSH KTIDARGANV HVAHGAGITM QFVKNVVIHG LHIHHISESS GGMIRDSVDH FGMRTRADGD GLSIYGSSNI WLDHISMSKC QDGLIDAIVG
301: STGITISNSH FTHHNDVMLL GAQNTNEADK HMQVTVAYNH FGKGLVQRMP RIRWGFVHVV NNDYTHWELY AIGGSQGPTI LSHGNRFIAP PHKPHYREVT
401: KRDYASEDEW KHWNWRSDKD VFMNGAYFRQ SGNPQYKCAH TRQQMIKPKN GLAVSKLTKY AGALDCRVGR RC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)