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AT5G15010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G80880.1); Has 37863 Blast hits to 13191 proteins in 288 species: Archae - 3; Bacteria - 35; Metazoa - 443; Fungi - 342; Plants - 35932; Viruses - 0; Other Eukaryotes - 1108 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL391146EMBL:CP002688
EnsemblPlants:AT5G15010EnsemblPlants:AT5G15010.1entrez:831353GeneID:831353
Genevisible:Q9LFQ4GO:GO:0005739Gramene:AT5G15010.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF227HOGENOM:HOG000238393InParanoid:Q9LFQ4InterPro:IPR002885
KEGG:ath:AT5G15010OMA:DTATFNSPaxDb:Q9LFQ4Pfam:PF01535
Pfam:PF13041Pfam:Q9LFQ4Pfscan:PS51375PhylomeDB:Q9LFQ4
PIR:T51446PRIDE:Q9LFQ4PRO:PR:Q9LFQ4PROSITE:PS51375
ProteinModelPortal:Q9LFQ4Proteomes:UP000006548RefSeq:NP_197005.2SMR:Q9LFQ4
STRING:3702.AT5G15010.1TAIR:AT5G15010TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.54850UniProt:Q9LFQ4
Coordinates (TAIR10) chr5:+:4857241..4858959
Molecular Weight (calculated) 65951.10 Da
IEP (calculated) 8.41
GRAVY (calculated) -0.31
Length 572 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGIFLIRSR LSIFRAPAVK CLRFSNVLPS LSNNCIVRLY MEPPVACVLP LGLCSMFSTS IADSEQVGFT RSNIEKDDES DIDLGCSISD ELVSEDVGKI
101: SKLVKDCGSD RKELRNKLEE CDVKPSNELV VEILSRVRND WETAFTFFVW AGKQQGYVRS VREYHSMISI LGKMRKFDTA WTLIDEMRKF SPSLVNSQTL
201: LIMIRKYCAV HDVGKAINTF HAYKRFKLEM GIDDFQSLLS ALCRYKNVSD AGHLIFCNKD KYPFDAKSFN IVLNGWCNVI GSPREAERVW MEMGNVGVKH
301: DVVSYSSMIS CYSKGGSLNK VLKLFDRMKK ECIEPDRKVY NAVVHALAKA SFVSEARNLM KTMEEEKGIE PNVVTYNSLI KPLCKARKTE EAKQVFDEML
401: EKGLFPTIRT YHAFMRILRT GEEVFELLAK MRKMGCEPTV ETYIMLIRKL CRWRDFDNVL LLWDEMKEKT VGPDLSSYIV MIHGLFLNGK IEEAYGYYKE
501: MKDKGMRPNE NVEDMIQSWF SGKQYAEQRI TDSKGEVNKG AIVKKSEREK NFLQQPEVRK VVREHGYSFW DE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)