suba logo
AT5G14940.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
vacuole 0.888
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: amino acid transmembrane transporter activity, transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G01350.1); Has 5224 Blast hits to 5039 proteins in 856 species: Archae - 0; Bacteria - 1785; Metazoa - 536; Fungi - 394; Plants - 2164; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3104eggNOG:KOG1237EMBL:AK226765EMBL:AL391146EMBL:CP002688EnsemblPlants:AT5G14940EnsemblPlants:AT5G14940.1
entrez:831346GeneID:831346Genevisible:Q9LFR1GO:GO:0005215GO:GO:0009624GO:GO:0016021Gramene:AT5G14940.1
hmmpanther:PTHR11654hmmpanther:PTHR11654:SF82HOGENOM:HOG000237400InParanoid:Q9LFR1InterPro:IPR000109InterPro:IPR020846KEGG:ath:AT5G14940
OMA:GVASNMVPANTHER:PTHR11654PaxDb:Q9LFR1Pfam:PF00854Pfam:Q9LFR1PhylomeDB:Q9LFR1PIR:T51439
PRIDE:Q9LFR1PRO:PR:Q9LFR1ProteinModelPortal:Q9LFR1Proteomes:UP000006548RefSeq:NP_196998.1SMR:Q9LFR1STRING:3702.AT5G14940.1
SUPFAM:SSF103473TAIR:AT5G14940TMHMM:TMhelixUniGene:At.31864UniProt:Q9LFR1
Coordinates (TAIR10) chr5:-:4831748..4834312
Molecular Weight (calculated) 61735.60 Da
IEP (calculated) 8.44
GRAVY (calculated) 0.26
Length 552 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGGEKRRGL SKSCALLIVI AGIERYAFKG VASNLVTYLT DVVKMSNSRA ATTVNTWSGF TFMLPLFSAP FADSYWDRFF TILASSSLYF VGLVGLTFTA
101: FAGSRSTTKT ISLYFLYTSL SLVALGLGVL NPSLQAFGAD QLDYDLDHDN DHEPSSENKE VKSNRKTQFF QWWYFGVCAG SLLGVTVMAY IQDTFGWVIG
201: FAIPTASMLL LIFLFLCGCG VYVYADPDLK AKPFQRILEI IKERVCGRNK ITLVNDHDLN AMELELQDQK PLCNCSNTEA NTTTKSLPDD HKSCKTGFSG
301: LETVKLLLRL LPIWTMLLMF AVIFQQPATF FTKQGMTMKR NIGPNFKIPP ATLQSTITLS IILLMPFYDK ILIPIAKKLT KNEKGISVKE RMGIGMFLSI
401: IAIVIAALVE RKRLKISKMM KTTPNLDPVS ILWLLPQYIL LGISDIFTVV GMQEFFYSEV PVSMRTMGFA LYTSVFGVGS FVSAALISII ETYTSSRGGK
501: HNWFADDMSE ARLDNYYWLL AFTSAISFLM YIVICKHFKS RSDDDDQCDT NC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)