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AT5G14920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:21109274 (2011): extracellular region
  • PMID:19825673 (2009): extracellular region
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Gibberellin-regulated family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Gibberellin-regulated family protein; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: GAST1 protein homolog 3 (TAIR:AT4G09600.1); Has 178772 Blast hits to 67361 proteins in 2790 species: Archae - 781; Bacteria - 40130; Metazoa - 64437; Fungi - 23576; Plants - 19463; Viruses - 6498; Other Eukaryotes - 23887 (source: NCBI BLink).
Protein Annotations
BioGrid:16621eggNOG:ENOG410J2CKeggNOG:ENOG410YXYHEMBL:AF372894EMBL:AL391146EMBL:AY045696EMBL:AY055791
EMBL:AY057724EMBL:AY087183EMBL:CP002688EnsemblPlants:AT5G14920EnsemblPlants:AT5G14920.1entrez:831344ExpressionAtlas:Q9LFR3
GeneID:831344Genevisible:Q9LFR3GO:GO:0005576GO:GO:0005886GO:GO:0009651GO:GO:0009737GO:GO:0009739
GO:GO:0009740GO:GO:2000377hmmpanther:PTHR23201hmmpanther:PTHR23201:SF11InParanoid:Q9LFR3IntAct:Q9LFR3InterPro:IPR003854
OMA:HSRKNVCPaxDb:Q9LFR3Pfam:PF02704Pfam:Q9LFR3PIR:T51437PRIDE:Q9LFR3PRO:PR:Q9LFR3
ProteinModelPortal:Q9LFR3Proteomes:UP000006548RefSeq:NP_196996.1STRING:3702.AT5G14920.1TAIR:AT5G14920UniGene:At.25096UniProt:Q9LFR3
Coordinates (TAIR10) chr5:+:4826598..4827761
Molecular Weight (calculated) 29139.80 Da
IEP (calculated) 10.56
GRAVY (calculated) -0.53
Length 275 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSLLSVFI FFHVFTNVVF AASNEESNAL VSLPTPTLPS PSPATKPPSP ALKPPTPSYK PPTLPTTPIK PPTTKPPVKP PTIPVTPVKP PVSTPPIKLP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)