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AT5G14870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : cyclic nucleotide-gated channel 18
Curator
Summary (TAIR10)
Encodes a member of the cyclic nucleotide gated channel family that is asymmetrically localized to the plasma membrane at the growing tip of the pollen tube and is involved in pollen tube growth. It likely directly transduces a cNMP signal into an ion flux that can produce a localized signal capable of regulating the pollen tip-growth machinery.
Computational
Description (TAIR10)
cyclic nucleotide-gated channel 18 (CNGC18); CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 16 (TAIR:AT3G48010.1); Has 3357 Blast hits to 3225 proteins in 243 species: Archae - 0; Bacteria - 71; Metazoa - 1532; Fungi - 0; Plants - 967; Viruses - 0; Other Eukaryotes - 787 (source: NCBI BLink).
Protein Annotations
BioGrid:16616eggNOG:ENOG410XPSEeggNOG:KOG0498EMBL:AL391149
EMBL:CP002688EnsemblPlants:AT5G14870EnsemblPlants:AT5G14870.1entrez:831339
Gene3D:2.60.120.10GeneID:831339Genevisible:Q9LEQ3GO:GO:0005249
GO:GO:0005262GO:GO:0006874GO:GO:0009860GO:GO:0016021
GO:GO:0016324GO:GO:0030552GO:GO:0030553GO:GO:0042391
GO:GO:0070588GO:GO:0071805Gramene:AT5G14870.1hmmpanther:PTHR10217
hmmpanther:PTHR10217:SF479HOGENOM:HOG000238338InParanoid:Q9LEQ3InterPro:IPR000595
InterPro:IPR005821InterPro:IPR014710InterPro:IPR018490KEGG:ath:AT5G14870
KO:K05391MINT:MINT-8062281OMA:YVGGPACPaxDb:Q9LEQ3
Pfam:PF00027Pfam:PF00520Pfam:Q9LEQ3Pfscan:PS50042
PhylomeDB:Q9LEQ3PIR:T51432PRIDE:Q9LEQ3PRO:PR:Q9LEQ3
PROSITE:PS50042ProteinModelPortal:Q9LEQ3Proteomes:UP000006548Reactome:R-ATH-2485179
Reactome:R-ATH-2514859Reactome:R-ATH-5620916RefSeq:NP_196991.1SMART:SM00100
SMR:Q9LEQ3STRING:3702.AT5G14870.1SUPFAM:SSF51206SUPFAM:SSF81324
TAIR:AT5G14870tair10-symbols:ATCNGC18tair10-symbols:CNGC18TCDB:1.A.1.5.26
TMHMM:TMhelixUniGene:At.31874UniProt:Q9LEQ3
Coordinates (TAIR10) chr5:-:4808268..4810897
Molecular Weight (calculated) 80368.30 Da
IEP (calculated) 8.26
GRAVY (calculated) -0.11
Length 706 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKIRSLRCL LPETITSAST AASNRGSDGS QFSVLWRHQI LDPDSNIVTY WNHVFLITSI LALFLDPFYF YVPYVGGPAC LSIDISLAAT VTFFRTVADI
101: FHLLHIFMKF RTAFVARSSR VFGRGELVMD SREIAMRYLK TDFLIDVAAM LPLPQLVIWL VIPAATNGTA NHANSTLALI VLVQYIPRSF IIFPLNQRII
201: KTTGFIAKTA WAGAAYNLLL YILASHVLGA MWYLSSIGRQ FSCWSNVCKK DNALRVLDCL PSFLDCKSLE QPERQYWQNV TQVLSHCDAT SSTTNFKFGM
301: FAEAFTTQVA TTDFVSKYLY CLWWGLRNLS SYGQNITTSV YLGETLFCIT ICIFGLILFT LLIGNMQSSL QSMSVRVEEW RVKRRDTEEW MRHRQLPPEL
401: QERVRRFVQY KWLATRGVDE ESILHSLPTD LRREIQRHLC LSLVRRVPFF SQMDDQLLDA ICGCLVSSLS TAGTYIFREG DPVNEMLFVI RGQIESSTTN
501: GGRSGFFNST TLRPGDFCGE ELLTWALMPN STLNLPSSTR SVRALSEVEA FALSAEDLKF VAHQFKRLQS KKLQHAFRYY SHQWRAWGAC FVQSAWRRYK
601: RRKLAKELSL HESSGYYYPD ETGYNEEDEE TREYYYGSDE EGGSMDNTNL GATILASKFA ANTRRGTNQK ASSSSTGKKD GSSTSLKMPQ LFKPDEPDFS
701: IDKEDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)