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AT5G14750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 66
Curator
Summary (TAIR10)
Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).
Computational
Description (TAIR10)
myb domain protein 66 (MYB66); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 23 (TAIR:AT5G40330.1); Has 9181 Blast hits to 8410 proteins in 556 species: Archae - 0; Bacteria - 0; Metazoa - 822; Fungi - 534; Plants - 5944; Viruses - 3; Other Eukaryotes - 1878 (source: NCBI BLink).
Protein Annotations
BioGrid:16604eggNOG:COG5147eggNOG:KOG0048EMBL:AF062900EMBL:AF126399EMBL:AL391149EMBL:AY519623
EMBL:BT026346EMBL:CP002688EnsemblPlants:AT5G14750EnsemblPlants:AT5G14750.1entrez:831327ExpressionAtlas:Q9SEI0Gene3D:1.10.10.60
GeneID:831327Genevisible:Q9SEI0GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0045165
GO:GO:0045893GO:GO:0048765Gramene:AT5G14750.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF625HOGENOM:HOG000237600InParanoid:Q9SEI0
IntAct:Q9SEI0InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT5G14750KO:K09422OMA:YLSSLWV
PaxDb:Q9SEI0Pfam:PF00249Pfam:Q9SEI0Pfscan:PS51294PhylomeDB:Q9SEI0PIR:T51420PIR:T51672
PRO:PR:Q9SEI0PROSITE:PS51294ProteinModelPortal:Q9SEI0Proteomes:UP000006548RefSeq:NP_196979.1SMART:SM00717SMR:Q9SEI0
STRING:3702.AT5G14750.1SUPFAM:SSF46689TAIR:AT5G14750tair10-symbols:ATMYB66tair10-symbols:MYB66tair10-symbols:WERtair10-symbols:WER1
UniGene:At.28680UniProt:C0SVP6UniProt:Q9SEI0
Coordinates (TAIR10) chr5:-:4763656..4764738
Molecular Weight (calculated) 23569.90 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.91
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKKVSSSGD EGNNEYKKGL WTVEEDKILM DYVKAHGKGH WNRIAKKTGL KRCGKSCRLR WMNYLSPNVK RGNFTEQEED LIIRLHKLLG NRWSLIAKRV
101: PGRTDNQVKN YWNTHLSKKL GIKDQKTKQS NGDIVYQINL PNPTETSEET KISNIVDNNN ILGDEIQEDH QGSNYLSSLW VHEDEFELST LTNMMDFIDG
201: HCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)