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AT5G14610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26980300 (2016): nucleus nucleolus
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEAD box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEAD box RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase 1 (TAIR:AT3G01540.1); Has 72370 Blast hits to 57752 proteins in 3325 species: Archae - 968; Bacteria - 36637; Metazoa - 12013; Fungi - 6274; Plants - 5549; Viruses - 294; Other Eukaryotes - 10635 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0513eggNOG:KOG0331EMBL:CP002688EnsemblPlants:AT5G14610EnsemblPlants:AT5G14610.1entrez:831313ExpressionAtlas:F4K6V1
Gene3D:3.40.50.300GeneID:831313GO:GO:0003676GO:GO:0004386GO:GO:0005524Gramene:AT5G14610.1hmmpanther:PTHR24031
hmmpanther:PTHR24031:SF274InterPro:IPR000629InterPro:IPR001202InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001InterPro:IPR014014
InterPro:IPR027417iPTMnet:F4K6V1OMA:GMNKFRRPaxDb:F4K6V1Pfam:PF00270Pfam:PF00271Pfam:PF00397
Pfscan:PS50020Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195PRIDE:F4K6V1PROSITE:PS00039PROSITE:PS01159
PROSITE:PS50020PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:F4K6V1Proteomes:UP000006548RefSeq:NP_196965.2
scanprosite:PS00039scanprosite:PS01159SMART:SM00456SMART:SM00487SMART:SM00490SMR:F4K6V1STRING:3702.AT5G14610.1
SUPFAM:SSF51045SUPFAM:SSF52540TAIR:AT5G14610UniGene:At.43560UniProt:F4K6V1
Coordinates (TAIR10) chr5:+:4711271..4714713
Molecular Weight (calculated) 76261.40 Da
IEP (calculated) 9.80
GRAVY (calculated) -0.42
Length 712 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATASAIRY APEDPNLPKP WKGLVDSRTG YLYFWNPETN VTQYERPASS APPKLAAIPV SSSVQTNQQS SSGFNSGKED DKYGRGSDGP KSDSGSRFNE
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLRECPNFM PYALSFVPGA IFALGGANVV
201: RCATSLGFLQ IIWSALFGGP NFLRCPPAAG FNSYLVLPAN GRMVYSAGFS APSPIQAQSW PIAMQNRDIV AIAKTGSGKT LGYLIPGFMH LQRIHNDSRM
301: GPTILVLSPT RELATQIQVE ALKFGKSSKI SCACLYGGAP KGPQLKEIER GVDIVVATPG RLNDILEMKR ISLHQVSYLV LDEADRMLDM GFEPQIRKIV
401: NEVPTKRQTL MYTATWPKEV RKIAADLLVN PAQVNIGNVD ELVANKSITQ TIEVLAPMEK HSRLEQILRS QEPGSKIIIF CSTKRMCDQL ARNLTRTFGA
501: AAIHGDKSQA ERDDVLNQFR SGRTPVLVAT DVAARGLDVK DIRVVVNYDF PNGVEDYVHR IGRTGRAGAT GLAYTFFGDQ DAKHASDLIK ILEGANQKVP
601: PQVREMATRG GGGMNKFRRW GTPSSGGGGG RGGYGDSGYG GRGESGYGSR GDSGYGGRGD SGGRGSWAPS RDSGSSGWGR ERSRSPERFR GGPPSTSSPP
701: RSFHEAMMMK NR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)