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AT5G14530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.844
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G66240.1); Has 22372 Blast hits to 13576 proteins in 557 species: Archae - 62; Bacteria - 5277; Metazoa - 7900; Fungi - 4335; Plants - 2143; Viruses - 0; Other Eukaryotes - 2655 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT9XeggNOG:KOG1446EMBL:AL163792EMBL:AY086271EMBL:BT025881EMBL:CP002688EnsemblPlants:AT5G14530
EnsemblPlants:AT5G14530.1entrez:831304Gene3D:2.130.10.10GeneID:831304GO:GO:0080008Gramene:AT5G14530.1hmmpanther:PTHR19861
HOGENOM:HOG000176477InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472KEGG:ath:AT5G14530
KO:K14962OMA:FMMLASAPfam:PF00400Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9LYK6PIR:T48626
PRINTS:PR00320PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_196957.1scanprosite:PS00678
SMART:SM00320SMR:Q9LYK6STRING:3702.AT5G14530.1SUPFAM:SSF50978TAIR:AT5G14530UniGene:At.28230UniProt:Q9LYK6
Coordinates (TAIR10) chr5:-:4684782..4686865
Molecular Weight (calculated) 36630.30 Da
IEP (calculated) 6.42
GRAVY (calculated) -0.31
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLTELDDGL VRRMAMGAVF SDFGGKIHSV GFHRTDDLLV TSSEDDSLRL FDIANAKQLK ITYHKKHGTD RVCFTHHPSS LICSSRYNLE STGESLRYLS
101: MYDNRILRYF KGHKDRVVSL CMSPINDSFM SGSLDRSVRL WDLRVNACQG ILHLRGRPAV AYDQQGLVFA IAMEGGAVKL FDSRCYDKGP FDTFLVGGDT
201: AEVNDIKFSN DGKSMLLTTT NNNIYVLDAY RGEKKCGFSL EPSQGTPIEA TFTPDGKYVL SGSGDGTLHA WNIENPSEVA RWENNIGVVS CLKWAPRRAM
301: FVAASTVLTF WIPNDGESPA PADPPTDQQQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)