suba logo
AT5G14520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23909681 (2013): nucleus nuclear matrix nucleolus
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pescadillo-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pescadillo-related; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: cell proliferation; LOCATED IN: nucleolus, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pescadillo, N-terminal (InterPro:IPR010613), BRCT (InterPro:IPR001357); Has 503 Blast hits to 494 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 168; Plants - 48; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5163eggNOG:KOG2481EMBL:AL163792EMBL:CP002688
EnsemblPlants:AT5G14520EnsemblPlants:AT5G14520.1entrez:831303Gene3D:3.40.50.10190
GeneID:831303GO:GO:0000463GO:GO:0000466GO:GO:0003723
GO:GO:0005654GO:GO:0005730GO:GO:0030687GO:GO:0043021
GO:GO:0070545GO:GO:0090069GO:GO:2000232Gramene:AT5G14520.1
HAMAP:MF_03028hmmpanther:PTHR12221hmmpanther:PTHR12221:SF6HOGENOM:HOG000006022
InterPro:IPR001357InterPro:IPR010613KEGG:ath:AT5G14520KO:K14843
ncoils:CoilOMA:QYISRDYPfam:PF06732Pfam:PF16589
Pfscan:PS50172PhylomeDB:Q9LYK7PIR:T48625PROSITE:PS50172
Proteomes:UP000006548RefSeq:NP_196956.1SMART:SM00292SMR:Q9LYK7
STRING:3702.AT5G14520.1SUPFAM:SSF52113TAIR:AT5G14520UniGene:At.50457
UniProt:Q9LYK7
Coordinates (TAIR10) chr5:-:4680789..4684330
Molecular Weight (calculated) 67947.80 Da
IEP (calculated) 8.99
GRAVY (calculated) -0.54
Length 590 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKHYRPTGK KKEGNAARYM TRSQALKHLQ VNLNLFRRLC IVKGIFPREP KKKIKGNHHT YYHVKDIAFL MHEPLLEKFR EIKTYQKKVK KAKAKKNEEL
101: ARLLLTRQPT YKLDRLIRER YPTFIDALRD LDDCLTMVHL FAVLPASDRE NLEVKRVHNC RRLTHEWQAY ISRSHALRKV FVSVKGIYYQ AEIEGQKITW
201: LTPHAIQQVF TNDVDFGVLL TFLEFYETLL AFINFKLYHS LNVKYPPILD SRLEALAADL YALSRYIDAS SRGMAVEPKV DASFSSQSND REESELRLAQ
301: LQHQLPSSEP GALMHLVADN NKEVEEDEET RVCKSLFKDL KFFLSREVPR ESLQLVITAF GGMVSWEGEG APFKEDDESI THHIIDKPSA GHLYLSRVYV
401: QPQWIYDCVN ARIILPTEKY LVGRIPPPHL SPFVDNEAEG YVPDYAETIK RLQAAARNEV LPLPGVGKED LEDPQNLLYA GVMSRAEEAE AAKNKKKMAA
501: QEKQYHEELK MEINGSKDVV APVLAEGEGE ESVPDAMQIA QEDADMPKVL MSRKKRKLYD AMKISQSRKR SGVEIIEQRK KRLNDTQPSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)