suba logo
AT5G14440.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Surfeit locus protein 2 (SURF2)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Surfeit locus protein 2 (SURF2); CONTAINS InterPro DOMAIN/s: Surfeit locus 2 (InterPro:IPR008833); BEST Arabidopsis thaliana protein match is: Surfeit locus protein 2 (SURF2) (TAIR:AT5G40570.1); Has 6258 Blast hits to 4510 proteins in 365 species: Archae - 8; Bacteria - 221; Metazoa - 2197; Fungi - 751; Plants - 330; Viruses - 76; Other Eukaryotes - 2675 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWYIeggNOG:ENOG410ZKD2EMBL:BT010715EMBL:BT010980EMBL:CP002688EnsemblPlants:AT5G14440EnsemblPlants:AT5G14440.1
entrez:831295ExpressionAtlas:Q6NPE4GeneID:831295Gramene:AT5G14440.1hmmpanther:PTHR32175hmmpanther:PTHR32175:SF2HOGENOM:HOG000015169
IntAct:Q6NPE4InterPro:IPR008833ncoils:CoilOMA:EHENDEAPfam:PF05477PhylomeDB:Q6NPE4Proteomes:UP000006548
RefSeq:NP_196948.2STRING:3702.AT5G14440.1TAIR:AT5G14440UniGene:At.5178UniGene:At.69921UniProt:Q6NPE4
Coordinates (TAIR10) chr5:-:4656065..4657807
Molecular Weight (calculated) 33398.70 Da
IEP (calculated) 5.32
GRAVY (calculated) -1.41
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATEEEVTT TKEGADLLGK PKYKKLENGR FKCVQTGHEL LEKDKKVYSQ SKRCRLGLID YALSHSKPPL NLFEQDPNAR SKLKCKLTGD TVNKTEEHIW
101: KHITGRRFLN RLEEKEREKE SGSIPAEGGE TPAKENGVED EDKKKKKKKN NKKKKNKKSV EKKKNGEDVA DEIEHENDEA VEEELEFWMP PDGERWDFDD
201: GRDRWGSDSD SDVEMNEETD PIGEFDEDGE ISMEESILIG EVDEDGKIVL DDTHASSNKR KHEELGSSDL PSKKKNKKKK KKKNVEATSS SY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)