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AT5G14370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CCT motif family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CCT motif family protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AY050892EMBL:AY091296
EMBL:CP002688EnsemblPlants:AT5G14370EnsemblPlants:AT5G14370.1entrez:831288
GeneID:831288Gramene:AT5G14370.1hmmpanther:PTHR31874HOGENOM:HOG000151170
InterPro:IPR010402KEGG:ath:AT5G14370OMA:WAVPEMEPfam:PF06203
Pfscan:PS51017PhylomeDB:Q949T9PROSITE:PS51017Proteomes:UP000006548
RefSeq:NP_568300.1STRING:3702.AT5G14370.1TAIR:AT5G14370UniGene:At.5173
UniProt:Q949T9
Coordinates (TAIR10) chr5:-:4632147..4633651
Molecular Weight (calculated) 38278.60 Da
IEP (calculated) 9.89
GRAVY (calculated) -1.21
Length 339 amino acids
Sequence (TAIR10)
(BLAST)
001: MCSNKASPVV GEEKQSTRSS KRIKKRKNRE ATTTMEDKSS SNLDASRKIR TKTKKPKFLS LKLELNTSHE INENPRSKKS KKKNNNKKQS KKKEPDTTPF
101: KEKKRAETTT TLGGGEKEEE QYDTVAAYLF NSATDSTISS IHDLLPSSAA TDVDCGGERN NLSPYDRQDH GSSSSSLLRT AMRKGASEEE ETTEERWVSY
201: SEVVEEVMSR SGTPRCCGGG DGNDGRPSLA LKLDYEQIME AWSDKGTLYV DGEPPQTVPD LHASADGFND GGEAGNLWAV PEMETTERLW RGHREASLLR
301: YKEKRQNRLF SKRIRYQVRK LNAEKRPRVK GRFVKREDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)