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AT5G14320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S13/S18 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S13/S18 family; FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13, bacterial-type (InterPro:IPR019980), Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S18 family (TAIR:AT1G77750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:16559eggNOG:COG0099eggNOG:KOG3311EMBL:AL163817EMBL:AY039533EMBL:AY052738EMBL:CP002688
EMBL:X86734EMBL:X91955EMBL:Z17611EMBL:Z47986EnsemblPlants:AT5G14320EnsemblPlants:AT5G14320.1entrez:831282
ExpressionAtlas:P42732Gene3D:4.10.910.10GeneID:831282Genevisible:P42732GO:GO:0003735GO:GO:0005840GO:GO:0006412
GO:GO:0009507GO:GO:0009570GO:GO:0009941GO:GO:0019843HAMAP:MF_01315hmmpanther:PTHR10871HOGENOM:HOG000039879
InParanoid:P42732InterPro:IPR001892InterPro:IPR010979InterPro:IPR018269InterPro:IPR019980InterPro:IPR027437ncoils:Coil
OMA:RTKNNSRPaxDb:P42732Pfam:P42732Pfam:PF00416Pfscan:PS50159PhylomeDB:P42732PIR:S59594
PRIDE:P42732PRO:PR:P42732PROSITE:PS00646PROSITE:PS50159ProteinModelPortal:P42732Proteomes:UP000006548RefSeq:NP_568299.1
scanprosite:PS00646SMR:P42732STRING:3702.AT5G14320.1SUPFAM:SSF46946TAIR:AT5G14320TIGRfam:TIGR03631TIGRFAMs:TIGR03631
UniGene:At.19669UniProt:P42732
Coordinates (TAIR10) chr5:-:4617839..4618772
Molecular Weight (calculated) 19097.70 Da
IEP (calculated) 10.92
GRAVY (calculated) -0.39
Length 169 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQMVAMPVA HSLSLICNWA KSNPLSRNTL ALPASNTPNK QSLSIRCARV GGVEIPANKR IEYSLQYIHG IGRTRARQIL VDLQMENKIT KDMAEEELII
101: LRDEVSKYMI EGDLRRFNAL AIKRLKEIQC YRGVRHIQGL PCRGQRTKNN CRTLKGKKIA IAGKKKVSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)