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AT5G14270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : bromodomain and extraterminal domain protein 9
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
bromodomain and extraterminal domain protein 9 (BET9); FUNCTIONS IN: DNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: bromodomain and extraterminal domain protein 10 (TAIR:AT3G01770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5076eggNOG:KOG1474EMBL:AK316726EMBL:AL163817EMBL:AY059785EMBL:CP002688EnsemblPlants:AT5G14270
EnsemblPlants:AT5G14270.1entrez:831277ExpressionAtlas:Q93YS6Gene3D:1.20.920.10GeneID:831277Genevisible:Q93YS6GO:GO:0005634
GO:GO:0006351GO:GO:0006355hmmpanther:PTHR22880hmmpanther:PTHR22880:SF134HOGENOM:HOG000242557InParanoid:Q93YS6IntAct:Q93YS6
InterPro:IPR001487InterPro:IPR027353iPTMnet:Q93YS6ncoils:CoilPaxDb:Q93YS6Pfam:PF00439Pfam:PF17035
Pfam:Q93YS6Pfscan:PS50014Pfscan:PS51525PhylomeDB:Q93YS6PIR:T48600PRIDE:Q93YS6PRINTS:PR00503
PRO:PR:Q93YS6PROSITE:PS50014PROSITE:PS51525ProteinModelPortal:Q93YS6Proteomes:UP000006548RefSeq:NP_568297.1SMART:SM00297
SMR:Q93YS6STRING:3702.AT5G14270.2SUPFAM:SSF47370TAIR:AT5G14270tair10-symbols:ATBET9tair10-symbols:BET9UniGene:At.5165
UniProt:Q93YS6
Coordinates (TAIR10) chr5:+:4605173..4608517
Molecular Weight (calculated) 75899.20 Da
IEP (calculated) 4.61
GRAVY (calculated) -0.63
Length 688 amino acids
Sequence (TAIR10)
(BLAST)
001: MTERNGGFPG DYCFEAPGGD YDEGSDSPRV SEGSNCSKRK VGETFGVSKM VLPLSGLSSS DRKELIRRLR QELEQIRVFQ KNFELSRTVA LTSSSASGLT
101: RVKSFGMSRC STGPGKTVNP ISAASKPTPV TTAVMLLMKQ CEALLKRLMS HQYGWVFNTP VDVVKLNILD YFNVIEHPMD LGTVKNKLTS GTYSCPSEFA
201: ADVRLTFSNA MTYNPPGNDV YVMADTLRKF FEVRWKTLEK KLSGTKVHTE PSNLDAHKEK HIVIPVPMAK KRKTTAVDCE NVVDPAKRVM TDEDRLKLGK
301: DLESLTEFPA QLINFLRDHN SNEGGIGDDE IEIDINDLSD HALFQLRDLL DEHLREIQNK KSSVEPCEIE LLHGSVPGNS SMQHCDGSEL DDEVVDIGEN
401: EHPTSSISPV TIEKDLVLGN SNGNSLGSVS GDPKMSSLPR ASKGLGTIDL EPMLDGATSA SPTRGSSVGG LDQLESASPE KISSVEADCQ QDGNSAQNEK
501: QLPPEKSYRA AILKNRFADI ILKAREKPLN QNDTRDPEKL QREREELELQ KKKEKARLQA EAKAAEEARR KAEAQAAAEA AAEAKRKLEL EREAARQALM
601: EMEQSVELNE NAKFLEDLEL LKTVDTDHLT NTIEEEDGPD VGLRSFSFGG SNPLEQLGLF MKQDEDEEEA DPLTSPAPEI DIEEGEID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)